Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso17g2160 | ATGGCTGGGTTTTTCTCTCTAGGAAGGCAGAACAAGGCAGAAGAACAAGAGGAAGATCAAAGGGAAGACAACTGTCAATTTTTGTTCAGGAACAACGTTAACGAGGAGATCTACAACAAGGGATTCGAGATATGGCCACAATCCTCGTACCACCACCACCACCAGAACTTGACCAACTTCTACTCCTTCGGTGTGGGCCCTAGTCGCAGAAACAACAACAATAGCTCCTCCAACAACAACGTTAACGACGAAGTTTCTGTGTCTTTCTCGGATGAGTCGAACCGGTTCGGGTTCACCGTGATGAGGTCCGGTGGCGGCGGCGTAGGTGGCGGCGGAATGAACTGTGAGGACTGTGGGAACCAAGCGAAGAAAGATTGTCAACACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGTCAGACTCACGTTAAGAGCACTTGGGTTCCCGCGGCTAAACGCCGTGAACGACAGCAACAACTTTCTGCGTTGCAGCATCAGCAACAGAATCAACAGCCACAGTTTCGTGGAGATCACTCAAAACGACACAGAGAAAACATCGAAGGTGCTGCTGCTGGTTCTCTCGCTTGCGTTCCAGTTCCTATCACCACCACAGGGTTGGAGCTGGGGCAATTTCCACCAGAGCTAAACTCTCCAGCGGTGTTTCGGTGTGTGAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTACGCGTATCAAACCGCAGTGAACATAGGAGGACACGTTTTCAAGGGAATTCTTTACGACCAAGGAACGGACGGTCCTTACGCGGGTGCAGGTTGTGAGGGTTCCTCCGGTGGCGGTGGCGAAGCTCAGCCACTAAGTCTAATGGCTGCAGCCACAACCACCACCGCCGCCACAACAAGCGGAAACCCTTTTGAGGCTTCACTCTACACGGCTCCGATGAATGCCTACATGGCTGGTACGCACTTCTTCCCACCCCCAAGATCCTAA | 981 | 0.524 | MAGFFSLGRQNKAEEQEEDQREDNCQFLFRNNVNEEIYNKGFEIWPQSSYHHHHQNLTNFYSFGVGPSRRNNNNSSSNNNVNDEVSVSFSDESNRFGFTVMRSGGGGVGGGGMNCEDCGNQAKKDCQHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQHQQQNQQPQFRGDHSKRHRENIEGAAAGSLACVPVPITTTGLELGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGTDGPYAGAGCEGSSGGGGEAQPLSLMAAATTTTAATTSGNPFEASLYTAPMNAYMAGTHFFPPPRS* | 327 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso17g2160 | 326 | MobiDBLite | consensus disorder prediction | 156 | 184 | - | - | |
Gso17g2160 | 326 | MobiDBLite | consensus disorder prediction | 163 | 177 | - | - | |
Gso17g2160 | 326 | PANTHER | PROTEIN SHI RELATED SEQUENCE 7 | 1 | 324 | - | - | |
Gso17g2160 | 326 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 213 | 260 | IPR006511 | - | |
Gso17g2160 | 326 | Pfam | Domain of unknown function (DUF702) | 112 | 262 | - | - | |
Gso17g2160 | 326 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 324 | IPR007818 | GO:0003700|GO:0006355 | |
Gso17g2160 | 326 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Gso17g2160 | 326 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 115 | 156 | IPR006510 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso17g2160 | Gso-Chr17 | 41244018 | 41246791 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso17g2160 | 1 | 325 | C2H2 Transcription Factor Family | AT1G19790 | 47.107 | 1.38e-78 | 241 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SRS | Gso17g2160 | DUF702 | 2.8e-65 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso17g2160 | - | - | gmx:100807290 | 601.668 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso14g1825 | 14 | 50621111 | 50623930 | Gso17g2160 | 17 | 41244018 | 41246791 | GST | |
Gso17g2160 | 17 | 41244018 | 41246791 | Gso4g0081 | 4 | 747503 | 748879 | PCT | |
Gso17g2160 | 17 | 41244018 | 41246791 | Gso6g0221 | 6 | 2135425 | 2138024 | PCT | |
Gso4g0081 | 4 | 747503 | 748879 | Gso17g2160 | 17 | 41244018 | 41246791 | PCT | |
Gso6g0221 | 6 | 2135425 | 2138024 | Gso17g2160 | 17 | 41244018 | 41246791 | PCT |