Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2160 ATGGCTGGGTTTTTCTCTCTAGGAAGGCAGAACAAGGCAGAAGAACAAGAGGAAGATCAAAGGGAAGACAACTGTCAATTTTTGTTCAGGAACAACGTTAACGAGGAGATCTACAACAAGGGATTCGAGATATGGCCACAATCCTCGTACCACCACCACCACCAGAACTTGACCAACTTCTACTCCTTCGGTGTGGGCCCTAGTCGCAGAAACAACAACAATAGCTCCTCCAACAACAACGTTAACGACGAAGTTTCTGTGTCTTTCTCGGATGAGTCGAACCGGTTCGGGTTCACCGTGATGAGGTCCGGTGGCGGCGGCGTAGGTGGCGGCGGAATGAACTGTGAGGACTGTGGGAACCAAGCGAAGAAAGATTGTCAACACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGTCAGACTCACGTTAAGAGCACTTGGGTTCCCGCGGCTAAACGCCGTGAACGACAGCAACAACTTTCTGCGTTGCAGCATCAGCAACAGAATCAACAGCCACAGTTTCGTGGAGATCACTCAAAACGACACAGAGAAAACATCGAAGGTGCTGCTGCTGGTTCTCTCGCTTGCGTTCCAGTTCCTATCACCACCACAGGGTTGGAGCTGGGGCAATTTCCACCAGAGCTAAACTCTCCAGCGGTGTTTCGGTGTGTGAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTACGCGTATCAAACCGCAGTGAACATAGGAGGACACGTTTTCAAGGGAATTCTTTACGACCAAGGAACGGACGGTCCTTACGCGGGTGCAGGTTGTGAGGGTTCCTCCGGTGGCGGTGGCGAAGCTCAGCCACTAAGTCTAATGGCTGCAGCCACAACCACCACCGCCGCCACAACAAGCGGAAACCCTTTTGAGGCTTCACTCTACACGGCTCCGATGAATGCCTACATGGCTGGTACGCACTTCTTCCCACCCCCAAGATCCTAA 981 0.524 MAGFFSLGRQNKAEEQEEDQREDNCQFLFRNNVNEEIYNKGFEIWPQSSYHHHHQNLTNFYSFGVGPSRRNNNNSSSNNNVNDEVSVSFSDESNRFGFTVMRSGGGGVGGGGMNCEDCGNQAKKDCQHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQHQQQNQQPQFRGDHSKRHRENIEGAAAGSLACVPVPITTTGLELGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGTDGPYAGAGCEGSSGGGGEAQPLSLMAAATTTTAATTSGNPFEASLYTAPMNAYMAGTHFFPPPRS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2160 326 MobiDBLite consensus disorder prediction 156 184 - -
Gso17g2160 326 MobiDBLite consensus disorder prediction 163 177 - -
Gso17g2160 326 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 324 - -
Gso17g2160 326 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 213 260 IPR006511 -
Gso17g2160 326 Pfam Domain of unknown function (DUF702) 112 262 - -
Gso17g2160 326 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 324 IPR007818 GO:0003700|GO:0006355
Gso17g2160 326 MobiDBLite consensus disorder prediction 1 23 - -
Gso17g2160 326 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 115 156 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2160 Gso-Chr17 41244018 41246791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2160 1 325 C2H2 Transcription Factor Family AT1G19790 47.107 1.38e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso17g2160 DUF702 2.8e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2160 - - gmx:100807290 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1825 14 50621111 50623930 Gso17g2160 17 41244018 41246791 GST
Gso17g2160 17 41244018 41246791 Gso4g0081 4 747503 748879 PCT
Gso17g2160 17 41244018 41246791 Gso6g0221 6 2135425 2138024 PCT
Gso4g0081 4 747503 748879 Gso17g2160 17 41244018 41246791 PCT
Gso6g0221 6 2135425 2138024 Gso17g2160 17 41244018 41246791 PCT