LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso17g2156	ATGGCTGATTTAGGCTCAGCCCCTTCCAAGAGAATGTGGTGTTCCGTTCCCGAAAGAATGCAGCTGCACTTGGCCATGCTTGCCTTGCAGTTTGGCTATGCTGGATTCCATGTCATCTCAAGAGCTGCACTTAACATGGGCGTTAGCAAGCTTGTTTTCCCTGTCTATCGGAACATCATTGCTTTGCTTTTGCTCCTTCCCTTTGCCTACTTCTTGGAAAAGAAGGAGAGGCCAGCCATGACTTTAAACTTCGTCGGCCAGTTCTTTCTTCTGGCACTCGTCGGGATTACAGCAAACCAAGGTTTCTACTTGCTTGGGTTGGACAACACATCCCCTACCTTCGCATCAGCAATACAGAACTCTGTGCCAGCCATTACATTCCTCATGGCAGTCATATTAAGAATAGAGCAAGTAAGATTGAACCGAAAAGATGGGTTGGCTAAGGTGGCGGGAACAGTGCTATGCGTGGCTGGGGCGACCGTGATCACACTATACAAAGGTCCAACAATATACAGCCCAACAACTCGTGTGAACAACAGCATGATCATGAACAGAAGCAACACAACAGTTATAACACCAATGTTTGATTTTGGGTCACTGTCACTGGGAGACGCAAAGGGGAAGAACTGGACCCTAGGGTGCTTATACCTGATCGGACACTGCTTGTCGTGGTCTGGTTGGCTTGTGTTGCAAGCACCGGTTCTCAAGAAGTACCCTGCTCGCCTCTCTGTCACTTCCTACACCTGCTTCTTTGGAATCTTGCAGTTTCTCGTCATTGCTTTGCTCCTTGAAAGAGACGCTCAGGCTTGGCTTTTCCACTCTGCTGGAGAAGTTTTCACTATTTTATACGCGGGAGTGGTGGCATCCGGAATTGCCTTCGCTGTACAAATATGGTGCATTGACAGAGGTGGCCCTGTGTTTGTTGCCGTCTATCAACCTGTTCAGACTTTTGTTGTGGCCATCATGGCTTCCATTGCTTTAGGAGAAGAGTTCTACTTGGGTGGGATCATTGGGGCAGTGTTGATTGTAGCGGGACTGTACTTTGTCTTATGGGGTAAAAGTGAAGAGAGGAAGTTTGCAATGGAACAGCTTGCGATGGCATCCACTGAGCATAATAGCATCGCAAGCCACGTCAAAGCATCACTTGCTCAGCCACTCCTTTCTTCATCAACAGAGAATGTTTGA	1185	0.4793	MADLGSAPSKRMWCSVPERMQLHLAMLALQFGYAGFHVISRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKERPAMTLNFVGQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVILRIEQVRLNRKDGLAKVAGTVLCVAGATVITLYKGPTIYSPTTRVNNSMIMNRSNTTVITPMFDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGILQFLVIALLLERDAQAWLFHSAGEVFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASIALGEEFYLGGIIGAVLIVAGLYFVLWGKSEERKFAMEQLAMASTEHNSIASHVKASLAQPLLSSSTENV*	395

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso17g2156	394	PANTHER	WAT1-RELATED PROTEIN	14	374	IPR030184	GO:0016021\|GO:0022857
Gso17g2156	394	Pfam	EamA-like transporter family	212	350	IPR000620	GO:0016020\|GO:0016021
Gso17g2156	394	Pfam	EamA-like transporter family	25	163	IPR000620	GO:0016020\|GO:0016021
Gso17g2156	394	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	56	166	-	-
Gso17g2156	394	PANTHER	WAT1-RELATED PROTEIN	14	374	-	-
Gso17g2156	394	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	249	355	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso17g2156	Gso-Chr17	41216294	41220563	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso17g2156	1	394	Nodulin-like Gene Family	AT1G75500	72.818	0.0	595

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso17g2156	-		-	gmx:100806765	761.14

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gso14g1823	14	50579681	50584436	Gso17g2156	17	41216294	41220563	GST
Gso17g2156	17	41216294	41220563	Gso4g0246	4	2274966	2278340	PCT
Gso17g2156	17	41216294	41220563	Gso6g0225	6	2183753	2187037	PCT
Gso4g0246	4	2274966	2278340	Gso17g2156	17	41216294	41220563	PCT
Gso6g0225	6	2183753	2187037	Gso17g2156	17	41216294	41220563	PCT

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