Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2127 ATGCTTTGCTTGATGCTTGGAAAAACAAAAACAAAAAGTACTACACCTATCATAATGCCATTCAGGAGCATTGTGCGTGAGCTCAAGGAGATTGGAGAGGGCATTAGCAACATGTATAGAAGAGGTGGAGAAGCCAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCTTACCACCACCACCATCATCATCTTCTTCTTCTTCTTCATCTTCATCATGGCAGAGCCGGTGGGCTAATTTGCCACCCGAGTTGCTATTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACTTCTTGGCCTGCACGTAGAGCACTTGTGGCATGTGCCTCAGTTTGTAAGTTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTTATCACTTTCCCCATATCACTAAAGCAGCCTGGTCCAAGAGACTCTCCAATCCAGTGTTTTATTAGGAGAGAAAGAATGACTTCAACATATTGTTTATATCTCGGTCTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTTTTACTGGCAGCAAAGAAGATTAGAAGGGCAACATGTACAGAATTTATAATATCATTGGTTTCCGATGATTTCTCTTGGGCTAGCAACACTTACGTTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTCACAATCTTGGATGGCGAGCCCGCGCATGAAACTTCACTTCCACTGAATTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCTAACAAGGTTGCTGCTGCTGCTAACTACAAAGTGGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGTATGATGCACTTAATCCCCATATTTGCAATCCAAGAAGGAGGGAACGCCCCTACTCCTTTGAAGTTTACCACCAATTATCTTAATGATCATGCGTCTACCACCACCGAGCATGCATCTACCACCACACCAGACTCAAAAGGAAAGAAACCAGAAGTTGTTGAGTTTGACTCAACTGGCACTGCCAATACTCCAGAATCAATCCAGCGGGCAAGGGAACCATTGGTTTTGAAAAACAAAGCTCCTAGATGGCACGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTAGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCAGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1365 0.4425 MLCLMLGKTKTKSTTPIIMPFRSIVRELKEIGEGISNMYRRGGEAKHVHRHGKSHIAPECSLPPPPSSSSSSSSSSSWQSRWANLPPELLLDIIQRLEASETSWPARRALVACASVCKLWREITKDVVKTPEQCGFITFPISLKQPGPRDSPIQCFIRRERMTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFIISLVSDDFSWASNTYVGKLRSNFLGTKFTILDGEPAHETSLPLNCKLQQRVHLKQVLPNKVAAAANYKVATVSYELNVLRTRGPRRMRCMMHLIPIFAIQEGGNAPTPLKFTTNYLNDHASTTTEHASTTTPDSKGKKPEVVEFDSTGTANTPESIQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2127 454 Pfam Tub family 143 449 IPR000007 -
Gso17g2127 454 Pfam F-box domain 82 129 IPR001810 GO:0005515
Gso17g2127 454 MobiDBLite consensus disorder prediction 322 353 - -
Gso17g2127 454 ProSitePatterns Tub family signature 2. 439 454 IPR018066 -
Gso17g2127 454 PRINTS Tubby superfamily signature 198 214 IPR000007 -
Gso17g2127 454 PRINTS Tubby superfamily signature 214 238 IPR000007 -
Gso17g2127 454 PRINTS Tubby superfamily signature 265 292 IPR000007 -
Gso17g2127 454 PRINTS Tubby superfamily signature 364 381 IPR000007 -
Gso17g2127 454 PRINTS Tubby superfamily signature 382 398 IPR000007 -
Gso17g2127 454 PRINTS Tubby superfamily signature 411 430 IPR000007 -
Gso17g2127 454 PRINTS Tubby superfamily signature 432 454 IPR000007 -
Gso17g2127 454 SUPERFAMILY F-box domain 80 126 IPR036047 GO:0005515
Gso17g2127 454 PANTHER TUBBY-RELATED 19 454 - -
Gso17g2127 454 SUPERFAMILY Tubby C-terminal domain-like 131 454 IPR025659 -
Gso17g2127 454 PANTHER TUBBY-LIKE F-BOX PROTEIN 19 454 - -
Gso17g2127 454 Gene3D - 73 128 - -
Gso17g2127 454 ProSitePatterns Tub family signature 1. 382 395 IPR018066 -
Gso17g2127 454 MobiDBLite consensus disorder prediction 44 79 - -
Gso17g2127 454 Gene3D Tubby Protein; Chain A 141 454 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2127 Gso-Chr17 40966720 40970643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2127 46 454 TUB Transcription Factor Family AT1G47270 60.437 4.14e-167 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso17g2127 Tub 1.7e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2127 K19600 - gmx:100794899 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0626 14 6156148 6159909 Gso17g2127 17 40966720 40970643 GST