Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2084 ATGATGAGAAAGCCTCATTTCTATGAGGTTTATTCCTCTGCCTTCAGCTCTCACAGACTGAAACTTCCCGATGGATTTGTGTGTCACATGGAGGGAAGGACATATGGATCAGTTTCGTTGACTGGTCCTAGTGGAAAAACATGGACAGTGCAATTGATTAAGCAGGAAAATGATCTATTTCTCCATCATGGGTGGTCGACATTTGTGGTGGATCATCAGCTAGAATGTGGTGAACTTTTGGTTTTCAGATATGAAGGTCACTTGCATTTTACCGTGCAAGTATTTGATAAGGATGCATGTGAGAAAGAGGCAGCGTTTCATTCTGAATGCAGTCAAAGTTCAAAGATAATGAGTACCAATGAGAACCAGGAACTTGAACTGGGTGTTGGTAAAGAACTATTGCGGTATGAGATAGTAAGACCAATTAGTATGTTCAGAGAAAACGAAGAAACCTCCAAAGCATGTTCAGCTAATGATGTCCCTGTGCCTTTTCACATGGACAATAGCAAAGAAGATGAAGAGACTGCCATCCTGTATAGAAGTGGGAAGGACGATCATCGTTATATTCTCAGTGGAGTTTCATTATCAAATGTATCAGCACACGATGAGAAAAAAGTTTCCCAGTCATTTATTTCCTCTTTTCCATATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCTTATCAGTTTTCGATGGCACATCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTTAATTCCGTGCCAACAACTAGAGTGCATACTAGTCACACTCTTTGTGGAGGATGGATGGCCTTTGTTCGTGGTAATAACATAAAGGTTGGAGATATCTGCATTTTTGAGCTTGTGCATGAGTGTGAATTACGTGTTCGCATTGCTGAGGTTGCAAAAGATGGGTCTGACTGCCAGGTTGGAAACCTAGCCATTACTAGGCCTAGTGCAGGACATGCTGTAACTTCCAGATGTATGCCAATGAATCCTAAAGTCAACTCAAAATGCATAAGAAAAGTTGATCTATCGGATAAGAAGTGGTCAAAGATTGGTCAAGAAACTATTTTATCCATTGACTTAAAGAAATCTAGTAGAGCTTCAAATACTTCTAAGAAGATGGGGCTTTGCCCTCAGTCGAAAGCTGCCCATAAAAAGTTGGCTGCTCCAAGGAGACATCGTGTTGACGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTAGCTCAAGCTTTTACTTCCCCTTTTCCTAGTTTTGTGAAAATAATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTACACTTCGTAATTCAAGAGGTGAATGCTGGACTGTGAACTCGGTTCCAGATGCAAAAGGTAGAACAGTTCACACCTTTTGTGGAGGGTGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGAGACACATGCATTTTTGAACTCGTTGCTCAATGTGAGATGCACGTTTACATATCTGGGGTTGGAAAGGAAGGGCTTGATCATCAAAATGGGCATTTAAAACTTACTAATAGATTAGCTAACGTTCCATCTACCTGCTAA 1689 0.4008 MMRKPHFYEVYSSAFSSHRLKLPDGFVCHMEGRTYGSVSLTGPSGKTWTVQLIKQENDLFLHHGWSTFVVDHQLECGELLVFRYEGHLHFTVQVFDKDACEKEAAFHSECSQSSKIMSTNENQELELGVGKELLRYEIVRPISMFRENEETSKACSANDVPVPFHMDNSKEDEETAILYRSGKDDHRYILSGVSLSNVSAHDEKKVSQSFISSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECELRVRIAEVAKDGSDCQVGNLAITRPSAGHAVTSRCMPMNPKVNSKCIRKVDLSDKKWSKIGQETILSIDLKKSSRASNTSKKMGLCPQSKAAHKKLAAPRRHRVDDELSSQAKAGLRMLFALDEQRVAQAFTSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVTLRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMHVYISGVGKEGLDHQNGHLKLTNRLANVPSTC* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2084 562 SUPERFAMILY DNA-binding pseudobarrel domain 11 103 IPR015300 -
Gso17g2084 562 SMART B3_2 442 538 IPR003340 GO:0003677
Gso17g2084 562 SMART B3_2 217 313 IPR003340 GO:0003677
Gso17g2084 562 SMART B3_2 7 98 IPR003340 GO:0003677
Gso17g2084 562 Gene3D - 1 100 IPR015300 -
Gso17g2084 562 CDD B3_DNA 12 96 IPR003340 GO:0003677
Gso17g2084 562 Pfam B3 DNA binding domain 12 97 IPR003340 GO:0003677
Gso17g2084 562 Pfam B3 DNA binding domain 442 532 IPR003340 GO:0003677
Gso17g2084 562 Pfam B3 DNA binding domain 217 309 IPR003340 GO:0003677
Gso17g2084 562 Gene3D - 427 537 IPR015300 -
Gso17g2084 562 Gene3D - 198 314 IPR015300 -
Gso17g2084 562 SUPERFAMILY DNA-binding pseudobarrel domain 435 536 IPR015300 -
Gso17g2084 562 CDD B3_DNA 440 534 IPR003340 GO:0003677
Gso17g2084 562 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 417 557 - -
Gso17g2084 562 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 2 416 - -
Gso17g2084 562 ProSiteProfiles B3 DNA-binding domain profile. 442 538 IPR003340 GO:0003677
Gso17g2084 562 SUPERFAMILY DNA-binding pseudobarrel domain 212 310 IPR015300 -
Gso17g2084 562 ProSiteProfiles B3 DNA-binding domain profile. 217 313 IPR003340 GO:0003677
Gso17g2084 562 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Gso17g2084 562 CDD B3_DNA 215 309 IPR003340 GO:0003677
Gso17g2084 562 PANTHER B3 DOMAIN-CONTAINING 2 416 - -
Gso17g2084 562 PANTHER B3 DOMAIN-CONTAINING 417 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2084 Gso-Chr17 40488191 40492008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2084 2 309 B3 DNA Binding Superfamily AT3G18990 23.167 2.70e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso17g2084 B3 1.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2084 - - gmx:100804621 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0672 14 6752614 6757135 Gso17g2084 17 40488191 40492008 GST