Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1990 ATGATAGAAGAAGGGTGTGCAAAAATGCATTTTTTTCAGGCATCTATGGAGAGAAAATATGACAATGCAAATATAGAAGCTGGTGTGGATCTGAAGGTGATGATTGAGGAAATGGAATCCATTCATGTGCCTTCAGTGTTCATCTGCCCAATCTCCCATGAACCAATGCAAGACCCTGTGACCCTTTGTACTGGCCAAACCTACGACAGATCCAACATCCTCAAATGGTTCTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGAGCTTTGGGACGATGTTGTCACTCCCAACAGCACCCTCTCCCACTTGATCCTCACTTGGTTCTCTCAAAAGTACTTGGCCATGAAGAAGAAGCTTGAAGATGTTCAAGGAAGAGCCTTGGAAATCTTGAACACTCTCAAGAAGGTAAAGGGTCAAGCCAGAGTTCGAGCACTTCAAGATCTAAGGCAACTTGTTAGTTCTCATGTCAATGCAAGAAAGACTCTGGAGGAAAATGGTGGTGTTGCTTTGGTTTTCAATTTTTTGGGTCCTTTCACTTCCCATGCTGTTGGGTCAGAAGCTATTGGGATCATTGTGTGTTTGGATTTGAGTTCTGAGGTGAAGAGAAGCCTCATGCATCCTGCTGAGATTTCATTGTTGGTGGATATCATGAATGAGGGAACCATTGAGACCAAAATGAACTGTGCCAAGTTGATTGAGATGTTGTTGATGGAAGGGAACAATGAGGTTGTTTCAAGTTTGAGTCTTTTGGTTGGTTTATTGAGGCTAGTGAGGGATAAGAAACACCCAAATAAAATGGTCTCAATTGGTCTCATATTACTTAAAGCTATAACATGTTCCCATGAATCAGTTAGAAGCTCTTTGATAAGCCTAGGAGCAATTTCTCTATTGGTTGAGCTTTTGCCTAGTTTGAACAATGAGTGCTTGGAGAAAGCACTCTACATTCTTAAGGTGTTGTCAACACTCCAAGAGGGAAGAATGGCTTTGAAGGAATGTCCAAATATCATTCCAAATGTGGTGAAGTTGCTGATGAGAGTCTCAGAGAGGTGTACACAATTAGCATTGTCAATATTGTGGGCTATTTACAAGCTTGCCCCTGAGGAATGTGCCTCACAGGCTGTGGAGGCTGGATTGGCAGCAAAGCTTCTTTTGGTGATTCAGAGTGGATGCAACCCTGGGTTGAAGCAAATGTCTTCTGAGTTTTTGAAAATGTGCAGCCTGAATTACTCTACTAGCATCTTGGTTTCCAAGTGTATGCTCACCACAACAATACAATGA 1284 0.4221 MIEEGCAKMHFFQASMERKYDNANIEAGVDLKVMIEEMESIHVPSVFICPISHEPMQDPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDVVTPNSTLSHLILTWFSQKYLAMKKKLEDVQGRALEILNTLKKVKGQARVRALQDLRQLVSSHVNARKTLEENGGVALVFNFLGPFTSHAVGSEAIGIIVCLDLSSEVKRSLMHPAEISLLVDIMNEGTIETKMNCAKLIEMLLMEGNNEVVSSLSLLVGLLRLVRDKKHPNKMVSIGLILLKAITCSHESVRSSLISLGAISLLVELLPSLNNECLEKALYILKVLSTLQEGRMALKECPNIIPNVVKLLMRVSERCTQLALSILWAIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPGLKQMSSEFLKMCSLNYSTSILVSKCMLTTTIQ* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1990 427 SUPERFAMILY ARM repeat 141 410 IPR016024 -
Gso17g1990 427 CDD RING-Ubox_PUB 47 89 IPR045210 -
Gso17g1990 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 125 IPR013083 -
Gso17g1990 427 ProSiteProfiles U-box domain profile. 42 116 IPR003613 GO:0004842|GO:0016567
Gso17g1990 427 SUPERFAMILY RING/U-box 38 113 - -
Gso17g1990 427 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 19 426 - -
Gso17g1990 427 SMART Ubox_2 46 109 IPR003613 GO:0004842|GO:0016567
Gso17g1990 427 Pfam U-box domain 43 113 IPR003613 GO:0004842|GO:0016567
Gso17g1990 427 PANTHER WDSAM1 PROTEIN 19 426 IPR045185 GO:0061630
Gso17g1990 427 Coils Coil 147 167 - -
Gso17g1990 427 Gene3D - 128 418 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1990 Gso-Chr17 39248481 39250170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1990 29 427 U-box Gene Family AT3G49810 63.840 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1990 - - gmx:100776107 820.846