Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1970 ATGAGTTTTCATGATACATCAAACACAGGGCTTGGACTTGGTCTTGGTCTTGGTCTTGTTAGCTTCCATGATCAATCAGGGAATTGCATGAAGAGTACAAATAATGATCCCATGAGAGAAAGCCATAAGATCAAAAAAGTGGAGAATCCATCATCAAAATGTAACAACACATACCCTTCACTTACATTAGGACCACCAGATGATGATGATGGTGATGATGATGATGAAGTGAATAATAATAATCAACCAAGTTCAAAGACTGAGTCCTATGAATATTTTCGTCCCCAAGTTTCTTCTCCTAGTGCGGTGTCTTCATTTTCCAACTCTTCTAGCATCAAGAGGGAAAGAGATCAGGTCTTGGGAGGAGAAGAATTTGAGGTAGTGGTAGAGAAAGTTCCAACAAGGGTTGTTGGTGATGTTGATGAGGATGGTAACCCCAGAAAGAAACTTAGACTCACAAAAGAACAAGCAGCAGTCTTGGAGGAAAATTTCAGAGAGCATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAATGAAACTGAATCTGCGAGCAAGACAAGTAGAGGTGTGGTTTCAGAATAGGAGAGCCAGGACAAAACTAAAGCAAACCGAGTCAGATTGTGAACTACTCAAGAAGTGCTGTGATACTCTAACAGTAGAAAATAAGAAGCTGCAAAAGGAGCTGCAAGAACTAAAGTCAATGCAAGCAACGCCAGTGCCTCTTTATATGCAGATTCCAGCAGCCACACTTTCCATATGCCCTTCTTGTGAGAGAATCTGCGGTGGCAACGAAAACAACGGTGACAACAACAACAATGGCTCTTCACACACGACAACGTTGCTCATTGGCTCAAAGACGCATCATCATTCCTTTTACAAAAGTAACAACTATCCATTCCCTCATTCATCATCCGCGGCATGCTAG 930 0.4172 MSFHDTSNTGLGLGLGLGLVSFHDQSGNCMKSTNNDPMRESHKIKKVENPSSKCNNTYPSLTLGPPDDDDGDDDDEVNNNNQPSSKTESYEYFRPQVSSPSAVSSFSNSSSIKRERDQVLGGEEFEVVVEKVPTRVVGDVDEDGNPRKKLRLTKEQAAVLEENFREHSTLNPKQKQELAMKLNLRARQVEVWFQNRRARTKLKQTESDCELLKKCCDTLTVENKKLQKELQELKSMQATPVPLYMQIPAATLSICPSCERICGGNENNGDNNNNGSSHTTTLLIGSKTHHHSFYKSNNYPFPHSSSAAC* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1970 309 MobiDBLite consensus disorder prediction 78 115 - -
Gso17g1970 309 PANTHER - 1 307 - -
Gso17g1970 309 SMART HOX_1 145 207 IPR001356 GO:0003677
Gso17g1970 309 Pfam Homeobox associated leucine zipper 203 236 IPR003106 GO:0006355|GO:0043565
Gso17g1970 309 Gene3D - 139 209 - -
Gso17g1970 309 CDD homeodomain 146 204 IPR001356 GO:0003677
Gso17g1970 309 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677
Gso17g1970 309 SUPERFAMILY Homeodomain-like 142 204 IPR009057 -
Gso17g1970 309 SMART halz 203 246 IPR003106 GO:0006355|GO:0043565
Gso17g1970 309 Coils Coil 216 236 - -
Gso17g1970 309 MobiDBLite consensus disorder prediction 28 119 - -
Gso17g1970 309 Pfam Homeodomain 147 201 IPR001356 GO:0003677
Gso17g1970 309 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 307 - -
Gso17g1970 309 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1970 Gso-Chr17 38922393 38924995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1970 1 261 Homeobox Transcription Factor Family AT2G22800 49.242 6.00e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso17g1970 Homeodomain 3.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1970 K09338 - gmx:100797650 541.576