Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1955 ATGGGTATCTGCATATCCGTTGCAGAAGAAGCTCATGATGATGATAATGTGACAATATTTGAAGCAAGAAAGGTTCTAAATGGGAGTCAGAGACTTTGCTCTGTTTACTCCAAACAGGGTAGCAAAGGACTCAACCAAGATGCTGCCTCTGTTCATGAGGGTTATGGGATGGAGGATGGAACATTTTGTGGAGTTTATGATGGGCATGGAGGGAATGGACACAAAGTGAGCAAAATAGTAAGCAGTCGTTTATCTTCCCTCATACTGGACCAAAAGAATGTTCTTGAAAGGATTGATGAGATAGAAAATGGTTACAACAACACCACAAAAAAGCATGTTAACTCAGTGAAAGAGGAATTGCCTGCAAGGAACTTTCAGAAATGGAAAGAAGCAATTGTTAGTGCTTTCAAGGTGATGGACAAGGAGGTGAAGCTTCAAAAGAATCTAGACTGCTTTAGCAGTGGAACCACAGCTGTAGTTATCATAAAACAGGGTGAAGGTCTTGTCATAGCTAATCTGGGTGACTCAAGAGCAGTGTTGGGAACAATCTATGATGAAAAACTCGTAGCCATTCAATTGACCACTGATTTGAAACCTGAATTACCTCGAGAAGCAGAAAGAATAAGGAGGTGCAATGGTTGTGTGTGTGGGTCGAATGAAGAACCAGATATCCAGAGAGTGTGGATGCCCAACAATGAAAATTCACCTGGCCTAGCCATGTCTCGATCTTTGGGAGATTTCCTGCTCAAAGATCACGGTGTCATCGCCATCCCTGATGTTTCCTATCACCCTCTAACATCAACTGACCAATTCATTGTTCTTGCAAGTGATGGGGTGTGGGATGTACTAAGCAACAATGAGGTTGCATCAATTGTGTGGAGTGTAGACAGTGAAGAGGCAGCAGCAATGGCAGTAGTGGAAGCAGCCACTGCTGCATGGAATGAGAAGTATCCTTCCTATATGGCAGATGACTGCACCGTGGTTTGCCTCTTCCTGCACAAGAAATCACAACTTACTAACTTAAGTGCCCCTTAA 1035 0.4319 MGICISVAEEAHDDDNVTIFEARKVLNGSQRLCSVYSKQGSKGLNQDAASVHEGYGMEDGTFCGVYDGHGGNGHKVSKIVSSRLSSLILDQKNVLERIDEIENGYNNTTKKHVNSVKEELPARNFQKWKEAIVSAFKVMDKEVKLQKNLDCFSSGTTAVVIIKQGEGLVIANLGDSRAVLGTIYDEKLVAIQLTTDLKPELPREAERIRRCNGCVCGSNEEPDIQRVWMPNNENSPGLAMSRSLGDFLLKDHGVIAIPDVSYHPLTSTDQFIVLASDGVWDVLSNNEVASIVWSVDSEEAAAMAVVEAATAAWNEKYPSYMADDCTVVCLFLHKKSQLTNLSAP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1955 344 CDD PP2Cc 31 296 IPR001932 -
Gso17g1955 344 SMART PP2C_4 19 330 IPR001932 -
Gso17g1955 344 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 337 - -
Gso17g1955 344 SUPERFAMILY PP2C-like 27 333 IPR036457 -
Gso17g1955 344 Gene3D - 14 336 IPR036457 -
Gso17g1955 344 Pfam Protein phosphatase 2C 62 305 IPR001932 -
Gso17g1955 344 ProSiteProfiles PPM-type phosphatase domain profile. 32 332 IPR001932 -
Gso17g1955 344 PANTHER ALPHABET, ISOFORM E-RELATED 1 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1955 Gso-Chr17 38727840 38732158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1955 1 337 PP2C-type Phosphatase Gene Family AT5G26010 48.000 1.49e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1955 - - gmx:100815312 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1955 17 38727840 38732158 Gso6g0412 6 3847999 3849818 PCT
Gso6g0412 6 3847999 3849818 Gso17g1955 17 38727840 38732158 PCT