Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1950 ATGGAGAACAACATGTACAGTGCTCGACTAGACATGGCTGGCCGAAATTCTACCGGCATAGATGAAATTGCTCGCCATTTAGCACCAAAGCCACTGATTCATTGCTATTCATTTGACCTCAATAACCAAAACCATATTATAAATGGAATTCCAGTGCTTGCTGGAGAGCAAGGTGAACCTGCAAATGATGTCCATGTTGAAGGTTGCTTCTTAAACCCTGCTAGTATTGCGGATTCAAATTCATTTGTTACATCACAAGGAAAGACTATTGTAGGAGATGCCTCAAATCAAATTAACAACAATGATTTTCAAGAGCATTTAGTTGGAGGAAGGCCAATTGCTTCTGCTTCACTTTCTGCTGCTAGAATTGGCCTTCAAGCAAATTTAGAGAGTTCAGAAGCTTTGCCTTATTCAATGTGTTCATTGGAGGCATTAGGACCATATCTATTCAATAATTGGCAGGGCACATCAAACCCTTTGCCTGCAACTTTTGGTGATCATCATCATGCCTACGATGAATTATCCAGTATTGGTAAGTGGAATGTGAACAAGATTCTGAGAGCTCCAGAGGCTGATGGGACTGAGATCCTGGCCTATTCATCCATAGGAAGCCTGGTTCAAAATGGATGGACATCATCAAATGTTGCAAACTTGGCCAATTTTGCCTACAATTCCCCTCATTGTAGTAATGAGCTATCACTAAGTCTTGCAAGATCTCCTCAAACTACTGGTCAGTGCTCAGAGATGAGCTGCTCCGGCGCATCACATAGCATGAATGGAACGAGGTCAGGCTTGGAGCAATCCTCCTGCAGCAGTAAGGAACTGTGTATGAGATTAGGCTCTAACAAACATGTCCAGTTTTCATCAGCAATATTAGGGTCCAGATTTCTTGTTGGAATTCAAGAGATACTTGCTCAAATTGCAACATATTCATTTGAAAATGTGGAACAGATAAATTGCTCAGCTGCTGGTGTTAGAGCAGGAGGAGATAAGTCAGCTTCAGCTTTCACACCAAAGAGAACGGTAGAGAATAATCAAAATGCATCCATGTTTGGAGCACATGTAGAAGAATCTCCATTGGAAGGACTTGCAACTGAATCAAACAAATCCCAACTTCTCATGCTTCTTCAGCTGGTGGACAATGGATATAGTCAATGTTTGGATGAGATTCATACTGTGGTATCTGCATTCCATGCTGCTACTGAACTGGATCCACACATGCATGCACATTTTGCGCTTCAAACGATCTCTCTCTTATACAAGGACTTGCGAGAGCGGATTAGCAATTGTATTCTTGCCATGGGACCGGATTTTAACAGCTTGTGTTCAGAAGAGGAGAAGGAATGGTCTCTTGAAACATCATTCATTCAAAAGCAATGGGCTCTCCAACAGCTAAAAAGAAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAAAGATCTGTCTCCGTACTACGCACTTGGATGTTTCAGAATTTCCTCCATCCGTATCCAAAGGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACGCGAAGCCAGGTATCCAATTGGTTTATCAATGCACGTGTTCGACTGTGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTAGAAATGAAGAAGGAATGGAGATCACTCAAAGAACCAGGATAAGCATGAAAAATCAAATGTTGAATATCAATTGA 1716 0.4167 MENNMYSARLDMAGRNSTGIDEIARHLAPKPLIHCYSFDLNNQNHIINGIPVLAGEQGEPANDVHVEGCFLNPASIADSNSFVTSQGKTIVGDASNQINNNDFQEHLVGGRPIASASLSAARIGLQANLESSEALPYSMCSLEALGPYLFNNWQGTSNPLPATFGDHHHAYDELSSIGKWNVNKILRAPEADGTEILAYSSIGSLVQNGWTSSNVANLANFAYNSPHCSNELSLSLARSPQTTGQCSEMSCSGASHSMNGTRSGLEQSSCSSKELCMRLGSNKHVQFSSAILGSRFLVGIQEILAQIATYSFENVEQINCSAAGVRAGGDKSASAFTPKRTVENNQNASMFGAHVEESPLEGLATESNKSQLLMLLQLVDNGYSQCLDEIHTVVSAFHAATELDPHMHAHFALQTISLLYKDLRERISNCILAMGPDFNSLCSEEEKEWSLETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRTWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEEGMEITQRTRISMKNQMLNIN* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1950 571 CDD homeodomain 472 533 IPR001356 GO:0003677
Gso17g1950 571 Pfam Homeobox KN domain 489 528 IPR008422 GO:0003677|GO:0006355
Gso17g1950 571 Gene3D - 475 555 - -
Gso17g1950 571 Pfam Associated with HOX 291 428 IPR006563 -
Gso17g1950 571 ProSiteProfiles 'Homeobox' domain profile. 469 532 IPR001356 GO:0003677
Gso17g1950 571 SUPERFAMILY Homeodomain-like 474 541 IPR009057 -
Gso17g1950 571 SMART prehox3 285 429 IPR006563 -
Gso17g1950 571 PANTHER HOMEOBOX PROTEIN ATH1 10 567 - -
Gso17g1950 571 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 567 - -
Gso17g1950 571 SMART HOX_1 472 536 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1950 Gso-Chr17 38666036 38670504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1950 230 545 Homeobox Transcription Factor Family AT4G32980 54.573 2.39e-102 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso17g1950 POX 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1950 - - gmx:100812648 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1950 17 38666036 38670504 Gso4g0436 4 4124317 4128346 PCT
Gso17g1950 17 38666036 38670504 Gso6g0418 6 3879814 3883151 PCT
Gso4g0436 4 4124317 4128346 Gso17g1950 17 38666036 38670504 PCT
Gso6g0418 6 3879814 3883151 Gso17g1950 17 38666036 38670504 PCT