Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1948 ATGAGGACGGGAAGAAAATGCTCCTATTGTAGAAACTTTGGTCACAATTCAAGGACTTGCAACACTCATCACAAAGGAGGACTAAAGCTTTTTGGAGTGCAACTTAACCTTTCTAATTGTCGTTGTTGTTCTTCATTATCATCAACTAATTCATCCTCTTCCTCTTGTTCATCAACACTCATTGATATCATGAAAAGAAGAAGTTTGAGCATGAATTACCACCTTGTATCTTCACGAATCACCTCATCATCACCCTCTTATAATTTTCTGCTTGGTGGTGGTGTGGATGAAAATTCAGATAAAGCAATATCTGATGGGTACATAGCCAGTGTCGGTGGTGGTGGACTCACTTCAACAACTCGTCATCAAGAAAGGAAAAAAGGTGTGCCATGGAATGAGGAGGAGCACCGGAAATTTCTTGAAGGACTGGAGAAGCTGGGGAAGGGTAATTGGAGAGGCATTTCTAAACATTTTGTTACAACAAGAACACCATCCCAAGTGGCTAGTCATGCACAAAAATATTTTTTGCGTCAAACTAGCTTCAATAAAAGAAAGCGCCGTCGCAGCCTCTTTGATGTGGGAAGATATGAAACCACAACTACACTTGAACCATTAAATACTTGTTTAAAGGCAAGTGGTCAATTTGGGTCCCTATTTGGGACTATAATTACTTGTCCTCAGTGGGTTTCTTACAAACATTCAGTGATGAATTGGGCCACCACTTCAACAAACTACACTCATCAAAGTGCTGCCCCAGATCTAGAACTCAAGCTTGCTGTTCCCAAACAAACAGAGCCATGCGAAAGAACTTAA 813 0.4071 MRTGRKCSYCRNFGHNSRTCNTHHKGGLKLFGVQLNLSNCRCCSSLSSTNSSSSSCSSTLIDIMKRRSLSMNYHLVSSRITSSSPSYNFLLGGGVDENSDKAISDGYIASVGGGGLTSTTRHQERKKGVPWNEEEHRKFLEGLEKLGKGNWRGISKHFVTTRTPSQVASHAQKYFLRQTSFNKRKRRRSLFDVGRYETTTTLEPLNTCLKASGQFGSLFGTIITCPQWVSYKHSVMNWATTSTNYTHQSAAPDLELKLAVPKQTEPCERT* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1948 270 CDD SANT 130 175 IPR001005 -
Gso17g1948 270 Pfam Myb-like DNA-binding domain 130 175 IPR001005 -
Gso17g1948 270 SUPERFAMILY Homeodomain-like 124 180 IPR009057 -
Gso17g1948 270 SMART sant 127 177 IPR001005 -
Gso17g1948 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 179 IPR017930 -
Gso17g1948 270 ProSiteProfiles SANT domain profile. 131 179 IPR017884 -
Gso17g1948 270 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 205 - -
Gso17g1948 270 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 126 178 IPR006447 GO:0003677
Gso17g1948 270 Gene3D - 129 181 - -
Gso17g1948 270 PANTHER TRANSCRIPTION FACTOR KUA1 4 205 - -
Gso17g1948 270 ProSiteProfiles Myb-like domain profile. 123 175 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1948 Gso-Chr17 38647030 38649391 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso17g1948 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1948 - - gsj:114392233 516.538