Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1942 ATGCCAAAGATGAAGCACCTGCTCAGAAAGCTTCACATCGGTGGTGGCGCTGCCACCATTAACCCTAGCACCAATCACAACGCATTGTCGTCGCACGCTCACAATCACACTCCCTCTCCCTCCACTTCCACGCTCCCTTCCCCCACCGTCGTTTCGGATCGGAGCCCCGTCTCCGTCGAGGCCCAAAACGAAGTCGCCGATTTCAATTTGTTGCAGGAGGAGGAGTTTCAGATGCAACTCGCGCTCGCAATCAGCGCCTCCGACTCCGATCGCCGCGACACCGCCGAATCCGCGCAGATCGACGCCGCCAAACAGATCAGCCTCGGTTACTCTGCTTCCCTCACTGACACTCATGCCCTAGTTCAGTTTCAATCCCTTCGATATTGGAACTACAATGTGATTGGCTATGATGAGAAAGTGATGGATGGGTTTTATGATGTTTATGGAGTTACCTCGAATTTGGTTGAGCGGGGGAAGATGCCGTTGTTGTTGGATCTGCAGACGGCTTCTGTCTTCGGAGATGTTGATTGTGAGGTGATTTTGGTGAACCATGTGGTTGATCTTGAGCTCAATCATCTTGAGAGGAAGGCGTGTAGTTTGGTCGAGGAGTGTTGTGTTTCTGAACTGGGACTGGTTTTGAGTGGCTTGCTTCAGAAGCTTGCAGATGCTGTTGTTAATAGAATGGGTGGACCGGTTGTTAATGCTGAGAAACTTACAAAGAGGTGGGCTATGAGGAGTCGTGAGTTACGGGATTCTATGCAGACCATTGTTCTTCCCCTTGGCTGTCTTGATGTCGGACTTTCACGTCACCGAGCCCTACTTTTTAAGGTACTTGCTGATAGGATTAACGTTCCCTGCAAGCTGGTAAAAGGGAGCTATTATACTGGAACTGATGATGGGGCTGTGAATTTGATTAAAGCAGATGATGGAAGTGAATACATTATTGATATGATGGGTGCTCCTGGCACTCTTATACCTGCTGAGGTACCCAGCAGCCAGCTCGGAAACAACAGTTTTGCTGTTAGGGGTTGTTCAGAGGTTGTAGTACTACCAAACAAGACACATTCAATGGTAGATGATGGAACTGGTGTTCTGGGAGTCTTTTCTGATCGTGGTAGAATTTCAACAATGGAAAGGGTCCAGACAGAAGAATTATTAGTTATGGGCAGTCAAACAAAGCCAGATGAAAAAAATATTTTTAAAGTAAACGAGACAAGGAGATTTGAACATACAGAATCATATGAATGCTCATCTCATACAGAACCATCACCTGCAGAGAATATGCGTGTAAAAAATGTCTCTAAGTATGTTCTCAGTGCAGCAAAGGACCCAGAATTTGCCCAAAAACTGCATAATGTTCTAGTAGAGAGTGGTGCCTTACCTCCTCCTGATCTTTTTTCAGATATCAATCCCCAAGATAGGGGTGTAGATAAAGTAAATGAAAACATTGTTGGTTCTGTTCAAGCGGACACAAATAGATTGTTATTAAGCTATGAAAAGTCTCTCATACCCTCATATGGGGTGGGCTCTGCCAGCGATGCTAAGTTATGTCAACCAGCTGACTGGTTAGCTGAACAGCAAAAAGAATTGCATACAAATGTTGAATTTTACAATTTTGCACAGGGTGGTAATACAAGGAATGGGTTTGTAAATGTTTCTGATAGAGATTATGACATAGAGCAATCTAATGCAATGAGTGTTGTTTTGGCTTCTATCCATTCACATAAGATATGTAAAGAAAAGCGTCCTGAATCTTCCTTACCCAAGGCAGCTCTTTCCTGCAAAATGCATAATGGGGCTGACTGTTTCTGTGAAGATGATGAAAATGGTTCTAGAAACAATGTTGAAGCTTCTTTTAATAATAGTGAATTAGGGAGAGATTCAGCTGTTCAAATAAATGAGATGGGGGTCAATGGAGATTGTTATGATGGTAGAAACAAGGAAGTTAACCCAGTTCTTGGTGAAAGCTCAGAATGGGAAATTCAATGGGAGGATCTTGATATTGGTGAGCGTATTGGTATTGGTTCTTATGGTGAAGTTTATCGTGCCGATTGTAATGGCACTGAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAATTCAAATCCGAAGTTGAGATCATGTTAAGGCTGCGGCATCCGAATGTCGTGCTCTTCATGGGAGCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAGAGGCAGTTTATATAGGCTATTACATCGACCCAATCTTCGACTTGATGAGAAGAAACGGTTGCGCATGGCTCTAGATGTGGCCAAGGGAATGAATTACTTGCACACAAGCCATCCTCCCATTGTCCACCGAGATTTAAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGGCTGTTAAGGTCTGTGATTTTGGTCTGTCACGAATGAAGCACCATACATATTTGTCATCCAAATCCTGTGCTGGAACGCCGGAGTGGATGGCGCCAGAAGTCTTGAGAAATGAACCAGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATCTTGTGGGAGTTAACTACCACAAGAATTCCCTGGCAAGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTTCAAAATAAACGGCTTGAAATTCCAGAAGATGTCAATCCAGTAGTAGCACAGATAATACGTGATTGCTGGCAAACGGAGCCACACTTGCGGCCATCATTCTCACAACTGATGTCTCGTCTTTACCGTCTTCAAAATTTGATTGTCCCAAAAACGGGTGCAACACATTAA 2802 0.4418 MPKMKHLLRKLHIGGGAATINPSTNHNALSSHAHNHTPSPSTSTLPSPTVVSDRSPVSVEAQNEVADFNLLQEEEFQMQLALAISASDSDRRDTAESAQIDAAKQISLGYSASLTDTHALVQFQSLRYWNYNVIGYDEKVMDGFYDVYGVTSNLVERGKMPLLLDLQTASVFGDVDCEVILVNHVVDLELNHLERKACSLVEECCVSELGLVLSGLLQKLADAVVNRMGGPVVNAEKLTKRWAMRSRELRDSMQTIVLPLGCLDVGLSRHRALLFKVLADRINVPCKLVKGSYYTGTDDGAVNLIKADDGSEYIIDMMGAPGTLIPAEVPSSQLGNNSFAVRGCSEVVVLPNKTHSMVDDGTGVLGVFSDRGRISTMERVQTEELLVMGSQTKPDEKNIFKVNETRRFEHTESYECSSHTEPSPAENMRVKNVSKYVLSAAKDPEFAQKLHNVLVESGALPPPDLFSDINPQDRGVDKVNENIVGSVQADTNRLLLSYEKSLIPSYGVGSASDAKLCQPADWLAEQQKELHTNVEFYNFAQGGNTRNGFVNVSDRDYDIEQSNAMSVVLASIHSHKICKEKRPESSLPKAALSCKMHNGADCFCEDDENGSRNNVEASFNNSELGRDSAVQINEMGVNGDCYDGRNKEVNPVLGESSEWEIQWEDLDIGERIGIGSYGEVYRADCNGTEVAVKKFLDQDFSGDALAQFKSEVEIMLRLRHPNVVLFMGAITRSPHFSILTEFLPRGSLYRLLHRPNLRLDEKKRLRMALDVAKGMNYLHTSHPPIVHRDLKSPNLLVDRHWAVKVCDFGLSRMKHHTYLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTTRIPWQGLNPMQVVGAVGFQNKRLEIPEDVNPVVAQIIRDCWQTEPHLRPSFSQLMSRLYRLQNLIVPKTGATH* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1942 933 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Gso17g1942 933 MobiDBLite consensus disorder prediction 18 53 - -
Gso17g1942 933 MobiDBLite consensus disorder prediction 16 53 - -
Gso17g1942 933 ProSiteProfiles Protein kinase domain profile. 666 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1942 933 PANTHER SERINE-THREONINE PROTEIN KINASE 61 929 - -
Gso17g1942 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Gso17g1942 933 PRINTS Tyrosine kinase catalytic domain signature 740 753 IPR001245 GO:0004672|GO:0006468
Gso17g1942 933 PRINTS Tyrosine kinase catalytic domain signature 779 797 IPR001245 GO:0004672|GO:0006468
Gso17g1942 933 PRINTS Tyrosine kinase catalytic domain signature 826 836 IPR001245 GO:0004672|GO:0006468
Gso17g1942 933 PRINTS Tyrosine kinase catalytic domain signature 845 867 IPR001245 GO:0004672|GO:0006468
Gso17g1942 933 PRINTS Tyrosine kinase catalytic domain signature 889 911 IPR001245 GO:0004672|GO:0006468
Gso17g1942 933 CDD STKc_MAP3K-like 672 918 - -
Gso17g1942 933 Gene3D Transferase(Phosphotransferase) domain 1 745 928 - -
Gso17g1942 933 Pfam Ethylene-responsive protein kinase Le-CTR1 122 325 - -
Gso17g1942 933 SUPERFAMILY Protein kinase-like (PK-like) 655 919 IPR011009 -
Gso17g1942 933 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 61 929 - -
Gso17g1942 933 Gene3D Phosphorylase Kinase; domain 1 659 743 - -
Gso17g1942 933 SMART serkin_6 666 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1942 933 Pfam Protein tyrosine and serine/threonine kinase 667 918 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1942 Gso-Chr17 38590357 38600237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1942 614 932 MAP Kinase Kinase Kinase AT5G11850 75.776 1.76e-174 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gso17g1942 PK_Tyr_Ser-Thr 9.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1942 K04424 - gmx:100779137 1824.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0833 14 9144872 9155129 Gso17g1942 17 38590357 38600237 GST