Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1938 ATGACTCCTTATTCTCTGAACCCACCAGGCCCTTCCATACAAGCTGGTCAAACCCAACTCTTCAATATTTCTCCTAATAATCAGGATTGCCGTACCATTTTTAACATATTTGATCCAAGGAAAACCAGGATAGAAATTGGAGGGTTAAGAGATAATTATCATCAACAGGATGACAAGATGATGGTATTGCATGATGGATCATCAAGCAACAGCAACAAGTCGTCCTTCAATAATAATATTTCACCTGAGCCAGTAGTTGTTATGGTTGATCCAATTATAAGCAGCGCATGTGATCAGCAGCATAATTTACCCTATGAGGAAGAGAGTAAAAATATTGATGATCACGGGTCTGGGAACAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAAATGATGAGACCGAGTATGAGTCCAACCACTGACAAAGCAATCAATTCAGGGCTCGAAAGCAGCAGCAGCAGGTACAGCCAAAGAAGCCTTTGTAACAACAACGCCAGTAGCACCACTAGGGTTTGTTCGGATTGTAATACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCTCTATGCAATGCCTGTGGCATTAGACAGAGGAAGGCAAGAAGGGCAATGACAAAAGCTACAAGTGGTTTGATCACTCCCATAACATGTGCAAAGACCAGAGTGCACAACAAGGAAAAGAAGTCTCGTGCAAACCATTTTGCACAGTTCAAGAACAAGTACAAGTCCACAACCACAACTAGTGCAGGCTCATCTGAGGGAGTGAGGAAGCTTGAATATTTAAAGGACTTCGCCATAAGCTTGAGGAGTAACAACTCTGATTTTGAACAAGGGTTTCCACGGGATGAAGTAGCTGAAGCGGCATTGCTTCTGATGGACTTGTCTTGTGGTTTTGTCCACTTATAA 921 0.4256 MTPYSLNPPGPSIQAGQTQLFNISPNNQDCRTIFNIFDPRKTRIEIGGLRDNYHQQDDKMMVLHDGSSSNSNKSSFNNNISPEPVVVMVDPIISSACDQQHNLPYEEESKNIDDHGSGNKWMSSKMRLMKKMMRPSMSPTTDKAINSGLESSSSRYSQRSLCNNNASSTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMTKATSGLITPITCAKTRVHNKEKKSRANHFAQFKNKYKSTTTTSAGSSEGVRKLEYLKDFAISLRSNNSDFEQGFPRDEVAEAALLLMDLSCGFVHL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1938 306 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
Gso17g1938 306 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 29 305 - -
Gso17g1938 306 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 29 305 - -
Gso17g1938 306 SMART GATA_3 167 218 IPR000679 GO:0006355|GO:0043565
Gso17g1938 306 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
Gso17g1938 306 CDD ZnF_GATA 172 209 IPR000679 GO:0006355|GO:0043565
Gso17g1938 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 207 - -
Gso17g1938 306 Gene3D - 168 250 IPR013088 GO:0006355|GO:0008270
Gso17g1938 306 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1938 Gso-Chr17 38535372 38538596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1938 120 305 C2C2-Gata Transcription Factor Family AT4G26150 37.143 1.11e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso17g1938 GATA 2.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1938 - - gmx:102664611 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0837 14 9179453 9182559 Gso17g1938 17 38535372 38538596 GST
Gso17g1938 17 38535372 38538596 Gso4g0440 4 4157237 4158890 PCT
Gso4g0440 4 4157237 4158890 Gso17g1938 17 38535372 38538596 PCT