Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1933 ATGTCCAATTTGACGTCTGCATCCAGTGAAATAAGTGCTACTTCTGGAATCAGGAATAACAACGGTTCTTCTCTCTATGCTCAATATTCCTCTACTTCAATAAGTCAAGAACCAGAACCTAAAAAGAAGCGAAGTCTTCCAGGTCACCCAGACCCTGAGGCAGAAGTGATAGCATTGACTCCGAAGACCCTTTTGGCAACAAACAGGTTCGTTTGTGAGATTTGCCAGAAAGGGTTCCAGAGAGACCAGAATCTGCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAGCTGAAGAAAAAGAGTAGCAAAAACGTGAGAAAGAAAGTGTATGTGTGCCCAGAGGCAACATGCGTTCACCATGACCCTTCAAGGGCACTTGGGGACCTCACTGGAATCAAGAAACACTTCTTCAGGAAACACGGAGAGAAGAAATGGAAGTGTGACAAGTGCTTCAAACGCTACGCGGTTCAATCAGATTGGAAAGCCCACTCCAAAATCTGTGGCACCAGAGAGTATAAATGCGACTGTGGTACCCTTTTCTCAAGAAGGGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAGGAAAGTGGTAGAACAGTGAACCCTCTTCTAGATCTATCAACTCAATTTCGTAGCCATGGCCTTCAACTTCAAGCACCATCATCACTTCTGATGAAAGGAGAACATGATCATCACTTCAACTTATTAAACCCAGAAATTCCATCATGGTTATTAAGTTCTCCAACAGTGGTAGTAGAAGAAGAAGCACTCCACAACAGTAGTCAAACCATAAGATCCACCTTAGATAATTTCTCCACAATACCACAGTTATTATTCCCAACAGCACAACATGTCAACAACTACCACTCCTCCTCATTAGTCCACCATGATCAAAACCCTAACCCTAGTACTACTACAACAACAACATCATCAACCACTTTGCTTCCTTCTTTGAGTACTTCTTTCCATTCTTCTTCTTCTTTTCCTCACATGTCAGCCACTGCTTTGTTGCAAAAAGCCTCACAAATAGGGGTAACAGTGAGTTGTAGTACTGCTGCACCTTCATCACAAACGATGATGCTGGTTAGACCCCACTTGTTACTGCATCAGCAGGTTCACGTGCCTGAATGTTCAACAACAACAGCAATTGCAACAACAGGAACTACTCTTGGGTATAATAATAATAATAATAATAATAATAATAATAATATGGCTTCATCTTCAGCCGTTTCTTCTGGAATGTTTGTTATGCCTTCACGTGAAGAAATAGGGACTACTCTTGGGTTTGCTCGTGGCTTGGCATCTTGA 1323 0.4248 MSNLTSASSEISATSGIRNNNGSSLYAQYSSTSISQEPEPKKKRSLPGHPDPEAEVIALTPKTLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKSSKNVRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCDKCFKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESGRTVNPLLDLSTQFRSHGLQLQAPSSLLMKGEHDHHFNLLNPEIPSWLLSSPTVVVEEEALHNSSQTIRSTLDNFSTIPQLLFPTAQHVNNYHSSSLVHHDQNPNPSTTTTTTSSTTLLPSLSTSFHSSSSFPHMSATALLQKASQIGVTVSCSTAAPSSQTMMLVRPHLLLHQQVHVPECSTTTAIATTGTTLGYNNNNNNNNNNNMASSSAVSSGMFVMPSREEIGTTLGFARGLAS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1933 440 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Gso17g1933 440 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 410 - -
Gso17g1933 440 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 410 - -
Gso17g1933 440 MobiDBLite consensus disorder prediction 1 36 - -
Gso17g1933 440 SMART c2h2final6 70 92 IPR013087 -
Gso17g1933 440 SMART c2h2final6 146 166 IPR013087 -
Gso17g1933 440 SMART c2h2final6 111 141 IPR013087 -
Gso17g1933 440 MobiDBLite consensus disorder prediction 297 318 - -
Gso17g1933 440 MobiDBLite consensus disorder prediction 1 53 - -
Gso17g1933 440 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Gso17g1933 440 Gene3D Classic Zinc Finger 70 115 - -
Gso17g1933 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Gso17g1933 440 Gene3D Classic Zinc Finger 124 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1933 Gso-Chr17 38462660 38467390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1933 21 204 IDZ Gene Family AT3G50700 79.688 1.81e-112 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso17g1933 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1933 K25870 - gmx:100807813 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0845 14 9305408 9309776 Gso17g1933 17 38462660 38467390 GST