Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1930 ATGTGCATGGAGAGAATCAGAGTGAAGGAGGAAGAAGCAATGACATGTGGAGGTGGTGGTTCATCATCTTCAAGCTTTATTTCTCCACAGGCACAGCCCATGGAAGGGTTGCACGAGGTGGGTCCCCCTCCGTTTCTGAGCAAGATCTTTGACATGGTGGAAGATCCTTCCACGGATTCCATTGTTTCATGGAGCATGGCTCGCAACAGCTTTGTCGTGTGGGACTCTCACAAGTTTTCTGCTCACATTCTGCCTCGTTACTTCAAGCACGCCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCTGATAAATGGGAATTTGCAAACGAAGGTTTTCTGGCAGGACAAAGGCACTTATTGAAGACCATAAAGAGAAGAAGAAATGTGTCACACAGCAATCAACAAAAAGGAGGAAGTGGAGCTTGTGTTGAAGTGGGGAAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGGGATAGAAACATTTTGATGGCAGAAATTGTGAGATTGAGGCACCAACAACTGAACTCAAGGGACCAATTAAGTGCCATGGAGGCAAGAATGCAAGCCACAGAGAAGAAACAGCAACAAATGATGAGTTTCTTAGCAAAAGCACTAAGCAATCCATCTTTCATGCAGCAATTAGTCCACAAAACCCCCCAAAGCAGAGAAGTGTTGTTGGGTGTTGAAATCAATAGGAAAAGGAGACTACCTGCTTGTCCAAGTGTGGAGAACTTGCAACAAGATAATCAAGATTTGGCAACTATGGAGACTGATATGGACACTTTTTTCGCACCGGCTTATGATAATGAATTCGGTAATGAAATCGATGAGCCTGCATCGATTTTGGTTGAGGATTCAATCTTGGAGGACTTTCTCAACAAAGACTTGATTACTGGGAATCCGGAGGATGAAGTTATAATTGGTGATTGCACCCAAGTCGATGTGCCGATGGAGGATTTGGTAGCAAACCCTGATGATTGGAGTGAGCAATTGCAGGACCTTGTGGATCATATGGACTACCTAGGATCCAAACCATAG 1068 0.4448 MCMERIRVKEEEAMTCGGGGSSSSSFISPQAQPMEGLHEVGPPPFLSKIFDMVEDPSTDSIVSWSMARNSFVVWDSHKFSAHILPRYFKHANFSSFIRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRNVSHSNQQKGGSGACVEVGKFGLEGELERLKRDRNILMAEIVRLRHQQLNSRDQLSAMEARMQATEKKQQQMMSFLAKALSNPSFMQQLVHKTPQSREVLLGVEINRKRRLPACPSVENLQQDNQDLATMETDMDTFFAPAYDNEFGNEIDEPASILVEDSILEDFLNKDLITGNPEDEVIIGDCTQVDVPMEDLVANPDDWSEQLQDLVDHMDYLGSKP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1930 355 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g1930 355 Coils Coil 155 182 - -
Gso17g1930 355 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Gso17g1930 355 Gene3D - 38 135 IPR036388 -
Gso17g1930 355 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g1930 355 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 269 IPR027725 -
Gso17g1930 355 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g1930 355 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g1930 355 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g1930 355 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g1930 355 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 23 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1930 Gso-Chr17 38407692 38411282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1930 32 355 HSF AT2G26150 56.667 7.67e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso17g1930 HSF_DNA-bind 1.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1930 K09419 - gmx:100820298 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0851 14 9476199 9479906 Gso17g1930 17 38407692 38411282 GST
Gso17g1930 17 38407692 38411282 Gso4g0446 4 4212716 4214814 PCT
Gso4g0446 4 4212716 4214814 Gso17g1930 17 38407692 38411282 PCT