Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1928 ATGGGTGCATCTGGAAAATGGGTAAAAGCATTAATCGGACTCAACAACAAGAGCGACCTTGGTGGGAAGAAGAAGAAATGGAGGCTGTGGAAGAGTTCTTCTGCGGGAGAAAACAGATCTCAAGGCAACGACTATGCTAGTAGTGTGGCTTCGGATTCTTTCAATTTTGCAGTGGCCACTGTGGTCAGAGCTCCACCCAAGGATTTCAAACTCCTCAAGCAAGAATGGGCCGCCACCCAAATCCAAACCGCTTTCCGTGCCTTCTTGGCAAGAAGGGCATTGAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTTGTAAGGGGTAGACTAGTGAGGAAGCAGGCTGCGGTCACATTGAGGTGCATGCAAGCCTTGGTTCGTGTCCAGGCACGTGTAAGAGCTCGGCGCGTGCGAATGTCCATTGAGGGGCAAGCAGTGCAGATCATGCTCAATGAACGCCGCACCAAAGCTGAGCTCATCAAACAAGCTGAGGAAGGATGGTGTGATAGCAAAGGATCATTGAAAGATGTCAAGACAAAATTACAGATGAGGCAAGAAGGAGCTTTCAAGAGGGAGAGAGCAATTGCATACTCTCTTGCCCACAAGCAATGGAGATCAACCCCCATCTCTAATTCAAGAGCAAACGCCGCTCTCAACAATCACGAGATGGACAAGGCGAACTGGGGATGGAGTTGGTTGGAACGTTGGATGGCAGCTAAACCATGGGAGAGTAGATTAATGGAACAAACCCATCATGCTGATGCCACAGAGAAGACCCCTCCTCCTCCTCCACCAAAGAAATGTGTTGACTCCTCCAATTCAAAAACATCAGAACTATGCAATATTAAAATCAGAAAGAACAATGTCAGCACAAGGATTTCTGCTAGACCTCCCCATATTGGACAAGCTACTCGCTTGTCGTCGAGTCCAAGTTCTGAGTTTCACTATGATGAGAGCTGCTCTAATTCATCCTCAATCTGCACATCTACAACTCCAATACCTTGTGACAGGACAGAGGATAGTAACAACTCTAGGCCTAGTTACATGAACCTCACCGAGTCAACCAAGGCAAAGCAGAAAACCAGCAATCATCAGTACAATAGATCTCAGAGGCAGCAGTCCATGGATGAGTTCCAGTTTCTCAAAAGAACAGCAGTTTTCTCTAATGCTTCTGACCCTTCAACCAACTTTTCTAGGCCACTTTACCTACCAACCTACATGGATAAGAGTTCACGGTGA 1242 0.4742 MGASGKWVKALIGLNNKSDLGGKKKKWRLWKSSSAGENRSQGNDYASSVASDSFNFAVATVVRAPPKDFKLLKQEWAATQIQTAFRAFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQIMLNERRTKAELIKQAEEGWCDSKGSLKDVKTKLQMRQEGAFKRERAIAYSLAHKQWRSTPISNSRANAALNNHEMDKANWGWSWLERWMAAKPWESRLMEQTHHADATEKTPPPPPPKKCVDSSNSKTSELCNIKIRKNNVSTRISARPPHIGQATRLSSSPSSEFHYDESCSNSSSICTSTTPIPCDRTEDSNNSRPSYMNLTESTKAKQKTSNHQYNRSQRQQSMDEFQFLKRTAVFSNASDPSTNFSRPLYLPTYMDKSSR* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1928 413 MobiDBLite consensus disorder prediction 250 275 - -
Gso17g1928 413 Pfam IQ calmodulin-binding motif 98 115 IPR000048 GO:0005515
Gso17g1928 413 Pfam IQ calmodulin-binding motif 76 95 IPR000048 GO:0005515
Gso17g1928 413 ProSiteProfiles IQ motif profile. 98 125 IPR000048 GO:0005515
Gso17g1928 413 PANTHER IQ-DOMAIN 5-RELATED 1 412 - -
Gso17g1928 413 MobiDBLite consensus disorder prediction 290 378 - -
Gso17g1928 413 ProSiteProfiles IQ motif profile. 74 102 IPR000048 GO:0005515
Gso17g1928 413 SMART iq_5 73 95 IPR000048 GO:0005515
Gso17g1928 413 SMART iq_5 96 117 IPR000048 GO:0005515
Gso17g1928 413 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1928 Gso-Chr17 38379214 38382403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1928 1 410 IQD Protein Family AT2G26180 54.233 1.08e-133 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1928 - - gmx:100805149 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0853 14 9497857 9501043 Gso17g1928 17 38379214 38382403 GST
Gso17g1928 17 38379214 38382403 Gso4g0448 4 4232832 4235288 PCT
Gso17g1928 17 38379214 38382403 Gso6g0429 6 3975205 3977761 PCT
Gso4g0448 4 4232832 4235288 Gso17g1928 17 38379214 38382403 PCT
Gso6g0429 6 3975205 3977761 Gso17g1928 17 38379214 38382403 PCT