Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1920 ATGAATCTGCGCCACGGCTCCAAGGTTTGGCTCGAGGACCGCGATTCGGCATGGCTCGCCGCCGAAGTGCTCGATTCTGACGGTAATCGCTTCTTGCTCGTCACCGATTCCGGCATGAAGGTTTTTGCTTCGCCGGAGAAGCTGTTTCCGAGGGATGCGGATGAAGAGGAGCACGGGGGATTTGAAGATATGACGAGGTTGGCGTACTTGAACGAGCCGGGAGTGTTGTCCAATCTTCGGAGAAGATATGCGCTCAATGATATTTACACATATACAGGGAGCATTTTAATAGCTGTTAATCCCTTCATGCAGCTTCCTCATTTATATGATTCCCATATGATGGAGCAATATAAGGGAGCTCCATTGGGTGAGCTTAGCCCTCATGTTTTTGCCATTGCTGATGCATCTTATAGTATCTTACCTTTGTTGGTGGACGTGCTGCTGTTGATGATAGAACAGTTGAACAGCAAGTTCTTGAATCATTTTGGGAAGTTTGTTGAAATTCAGTTTGATTCAAATGGTAGAATATCTGGAGCTGCAATTAGAACTTACCTACTGGAAAGATCACGTGTAGTGCAGATAATGGATCCAGAGAGAAATTATCACTGCTTTTATCAGTTGTGTGCATGTGAAAGGGATGCAGAGAAGTATAAGTTAGGACATCCAAGTCACTTCCACTATCTAAATCAAAGTAAAATCTATGAATTAGATGGTGTAAGCAATGCTGAAGAAAACCTGAAGACCAGAAGGGCAATGGATATTGTTGGCATCAGTCACGAGGATCAGGAAGCCATATTTCGTGTCTTAGCGGAAATTTTACATTTGGGAAACATTGAATTTTCACCTGGAAAAGAGCATGACTCATCGGGAGTAAAGGATGAAAAATCAAGATTTCATATGCAGATGGCTGCTGATCTTTTCATAGCTCCCAATCCAGGGGGCTCTGCTTCTCCATTTTTCCAGGCAGCCTTCATTGCTGCAGTTGATACTGTTTCTGTGCCCAATCACTGCATATACCACTGGTCGTTGTCCGCCGCTGTCCACTGCTGTCCTCCGTCGTCAACCACCTTCCGCCGCAAAACTGATCGGAGAACCCACCAGGAGAAGCGCTTTCTCCAGATCGGCCCATCCCTGAAGTTTCACTGCCAACCGCCATCGGACGCGCTGCCACTCGCTGTTTTTGTCTCCGGCGTGTGTAAGCCACGCGCCACCGTACAGGCCGTCTTTTTTGACGGCACCGCCACAGAACAGGTCACCAGTCCACCTCGCTTGGAAGAAGAAGTATACATGGAGATTCCACCTGGATATGGTGCCAGTAATGGAGGAAATAAAGTTTGCAGACTAAAGAAGGCCCTATATGGTCTCAAGCAGTCTCCTCGGGCTTGGCCTGTTGGAGGATGTCCAAGGTTAGGTCATCTTTTTGGCGACATCAAGCTTCAATTGTGGCAATACAATGCCTTTGGCGGTGTAGACAAGCAAAAAGAGAGCTATGTAGACTTAAACAAGAGGCAAACGAAGCTGGTTTCTAATGAAGAGGCTAAGAAAGTAGAGATTTCCAAACTTCAAAAGATGTTAGAAGCTCTGAATCTTGAATTGGATGCAGCTAAATTGGCAAAAATTAATGAGTGCAACAAGAATGCTGTTCTGCAAAATCAATTTGAATTGTCAGTAAAGGAAAAGTCTGCTTTAAAAAGAGAGCTAGTTGCAGTGGATGAATTACGAAAGGAAAATGCTCAATTAAAGGTTCCATTGGATGCATTTGAAAAGAAGTGCACAACCTTAGAGCTTGAGCTTATGAATGCTCAAAAAGGCCGGGATGAAACCATGGAGAAACTGAGAGAGTCTGAACAGAAGTGCTCTCAACTTGAGCAAAATGAGAAAAGGCTTGAGGAAAAGCTATTGAATTTAGAGGATGAAAATCATGTTCTTCGTCAGAAAGCCTTAAGTACCCCTCTTAAGAGTAACCGTCCAGGTTTTGCCAAGTCAATATCAGAAAAATACTCAAGTGCAATTGCCTCCCGCACTGAACGAAAGACCATATGTGAGTCACCCACACCCACAAAACTTATTGCCCCTTTTACACTAAGCTTGCCAGACTCTCGTCGATCTAATAAGTTAACAGCAGAGAGGCAGCAGGATAACTATGAATTTCTCTCTAAATGCATAAAAGAAAATTTGGGATTCAAAAATGGTAAACCTATTGCAGCTCGTATTATATACAAATGTCTACTTCATTGGCATTCATTTGAATCTGATCGCACAACCATTTTCGATTCCATAATCAAAGGCACAAATGAGGTTCTAAAGGGACCAAAATCTCCATTGAAGTTTATTGGATATGATGATGGTGTAGCGCATGTGGAGGCGAAATATCCTGCTATACTTTTTAAGCAACAACTAACTGCTTGTGTAGAGAAGATTTTTGGTCTTTTACGTGACAATTTGAAAAAGGACCTTTCTCCACTTCTGGGATCATGTATTCAGGCTCCCAAAACAGGACGAGGAGTGCATGGGGGAAAATCATCTAGATTTCCTGGTGGGATTCCCCAACAATCATCAAGTGGTCAGTGGAGTAACATTGTCAAATTTTTGGATTCACTCATGAGCAAACTTCGGCAAAATCATGTATGTTCTGTATTATTTCAATGGTCTTTGTTACTGAGTTTGGTCAATTAA 2676 0.432 MNLRHGSKVWLEDRDSAWLAAEVLDSDGNRFLLVTDSGMKVFASPEKLFPRDADEEEHGGFEDMTRLAYLNEPGVLSNLRRRYALNDIYTYTGSILIAVNPFMQLPHLYDSHMMEQYKGAPLGELSPHVFAIADASYSILPLLVDVLLLMIEQLNSKFLNHFGKFVEIQFDSNGRISGAAIRTYLLERSRVVQIMDPERNYHCFYQLCACERDAEKYKLGHPSHFHYLNQSKIYELDGVSNAEENLKTRRAMDIVGISHEDQEAIFRVLAEILHLGNIEFSPGKEHDSSGVKDEKSRFHMQMAADLFIAPNPGGSASPFFQAAFIAAVDTVSVPNHCIYHWSLSAAVHCCPPSSTTFRRKTDRRTHQEKRFLQIGPSLKFHCQPPSDALPLAVFVSGVCKPRATVQAVFFDGTATEQVTSPPRLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWPVGGCPRLGHLFGDIKLQLWQYNAFGGVDKQKESYVDLNKRQTKLVSNEEAKKVEISKLQKMLEALNLELDAAKLAKINECNKNAVLQNQFELSVKEKSALKRELVAVDELRKENAQLKVPLDAFEKKCTTLELELMNAQKGRDETMEKLRESEQKCSQLEQNEKRLEEKLLNLEDENHVLRQKALSTPLKSNRPGFAKSISEKYSSAIASRTERKTICESPTPTKLIAPFTLSLPDSRRSNKLTAERQQDNYEFLSKCIKENLGFKNGKPIAARIIYKCLLHWHSFESDRTTIFDSIIKGTNEVLKGPKSPLKFIGYDDGVAHVEAKYPAILFKQQLTACVEKIFGLLRDNLKKDLSPLLGSCIQAPKTGRGVHGGKSSRFPGGIPQQSSSGQWSNIVKFLDSLMSKLRQNHVCSVLFQWSLLLSLVN* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1920 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 306 IPR027417 -
Gso17g1920 891 Coils Coil 584 646 - -
Gso17g1920 891 Coils Coil 511 538 - -
Gso17g1920 891 SMART MYSc_2a 53 635 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso17g1920 891 ProSiteProfiles Dilute domain profile. 782 891 IPR002710 -
Gso17g1920 891 Gene3D - 199 256 - -
Gso17g1920 891 Gene3D Kinesin motor domain 8 140 IPR036961 -
Gso17g1920 891 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 424 462 IPR013103 -
Gso17g1920 891 PANTHER MYOSIN 769 879 - -
Gso17g1920 891 PANTHER MYOSIN 4 138 - -
Gso17g1920 891 PANTHER MYOSIN 547 769 - -
Gso17g1920 891 PANTHER MYOSIN 160 308 - -
Gso17g1920 891 PANTHER PROTEIN OPAQUE1-LIKE 769 879 - -
Gso17g1920 891 PANTHER PROTEIN OPAQUE1-LIKE 4 138 - -
Gso17g1920 891 PANTHER PROTEIN OPAQUE1-LIKE 547 769 - -
Gso17g1920 891 PANTHER PROTEIN OPAQUE1-LIKE 160 308 - -
Gso17g1920 891 Gene3D Myosin VI head, motor domain, U50 subdomain 258 306 - -
Gso17g1920 891 MobiDBLite consensus disorder prediction 832 854 - -
Gso17g1920 891 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gso17g1920 891 ProSiteProfiles Myosin motor domain profile. 59 286 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso17g1920 891 Gene3D Kinesin motor domain 161 198 IPR036961 -
Gso17g1920 891 Pfam Myosin head (motor domain) 62 138 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso17g1920 891 Pfam Myosin head (motor domain) 161 296 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1920 Gso-Chr17 38239960 38255571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1920 508 882 Myosins gene family AT4G33200 52.745 2.64e-126 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1920 K10357 - gmx:100790815 629.402