Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1919 ATGGCATTTCGATTTGGAGTCCTTATTCTTGCTTTGGTTATTTGTTTGAATTTCAATTCTGTGGAATCTGATGATGGAGCAACGTTGTTAGAGATAAAGAAGTCATTTAGAGATGTGGATAACGTGCTCTATGATTGGACTGACTCACCATCATCAGATTATTGTGCCTGGAGAGGGATATCATGTGATAATGTTACCTTTAATGTTGTTGCACTCAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAAACTTCAGAGTTTGGTCTCAATTGACCTCAGAGAAAACAGGTTATCAGGGCAGATACCAGATGAGATTGGTGACTGTTCATCTTTAAAGAACTTGGACTTGTCATTTAATGAAATTAGAGGGGATATACCATTTTCTATTTCTAAGTTGAAACAGCTGGAGAATCTGATTTTGAAGAACAACCAATTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTGATTTGAAGATTCTAGACCTGGCTCAAAATAATCTTAGCGGAGAAATACCAAGGCTTATATATTGGAACGAAGTTTTGCAATATCTAGGCTTGAGAGGGAACAATTTGGTTGGTTCACTATCACCAGACATGTGCCAGTTAACTGGGCTGTGGTATTTTGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTTGGATTTATCCTACAACCAACTAACTGGAGAGATACCATTCAATATTGGATTCTTGCAAGTAGCAACTTTGTCCTTGCAAGGCAATAAACTCTCTGGACATATTCCACCGGTGATCGGTCTCATGCAAGCACTTGCTGTCCTAGACTTGAGCTGCAACTTGTTAAGTGGATCGATCCCTCCTATCTTGGGAAATTTGACTTACACAGAAAAATTGTACTTGCATGGAAACAAGCTGACTGGCTTCATCCCCCCAGAGCTTGGAAATATGTCAAAGCTTCACTATTTGGAACTGAATGATAACCATTTAAGTGGACATATCCCGCCCGAGCTTGGAAAGCTTACAGATCTGTTTGACTTAAATGTTGCAAACAACAATCTTGAGGGGCCAATTCCTAGTAATCTTAGCTCATGTAAAAATCTCAACAGCCTCAATGTGCATGGCAACAAGTTGAATGGATCAATTCCCCCTTCTTTGCAGAGTTTGGAGAGCATGACCTCTTTGAATCTTTCTTCCAACAATCTTCAGGGCGCAATTCCAATAGAACTGTCGCGGATTGGCAATTTGGATACATTGGATATTTCAAACAATAACTTAGTTGGTTCCATCCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGTTGAATCTAAGCAGAAACAATTTAACAGGAATTATTCCAGCAGAATTTGGAAATCTTAGAAGTGTTATGGAAATTGATCTTTCAAATAATCAACTCTCTGGCTTGATTCCTGATGAACTTAGTCAGCTTCAAAACATGATATCCTTGAGACTTGAAAATAACAAATTGACTGGCGATGTGGCATCACTTTCAAATTGCATTAGTCTCTCTCTACTTAATGTGTCCTATAACAAACTATTTGGTGTTATCCCAACGAGTAACAACTTTACCAGGTTTCCCCCTGACAGTTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCGTGTCATGGTGCTCGCCCTTCAGAGCGAGTTACATTATCTAAGGCTGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGATTCTTCTTATGGTATTGCTGGCAGCTTGCCGACCACATAGTCCCTCTCCTTTTCCTGATGGATCATTTGACAAACCAGTTAATTTCTCCCCCCCAAAGCTAGTGATTCTTCATATGAATATGGCACTACATGTGTATGAAGATATCATGAGGATGACTGAAAACCTGAGTGAGAAGTATATAATTGGATATGGAGCATCAAGTACAGTTTATAAATGTGTTCTTAAGAATTGCAAGCCGGTGGCTATCAAGAGGATCTATTCTCACTATCCCCAATGTATTAAAGAATTTGAAACTGAACTTGAGACGGTTGGCAGCATCAAGCACCGGAATCTGGTCAGTCTCCAAGGTTATTCCTTGTCCCCATATGGGCATCTCCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGACCTACCAAGAAGAAAAAGCTTGACTGGGAGCTGCGTCTAAAAATAGCACTTGGAGCAGCACAAGGGCTTGCTTATCTACACCATGATTGCTGTCCTAGAATCATCCACAGAGATGTGAAATCATCTAACATTCTATTGGATGCAGACTTTGAGCCTCATCTCACTGATTTTGGCATTGCCAAAAGTCTCTGCCCCTCAAAGTCCCATACTTCTACTTACATAATGGGCACAATTGGCTATATAGACCCTGAGTATGCTAGAACTTCACGTCTCACTGAGAAGTCTGATGTGTACAGTTACGGTATTGTTTTACTTGAGTTGCTAACTGGAAGGAAAGCTGTTGACAATGAATCCAACCTCCACCATCTGATTTTGTCCAAGGCAGCAACCAATGCAGTGATGGAAACAGTTGATCCAGACATTACTGCCACATGCAAGGACCTAGGAGCTGTAAAAAAGGTTTATCAGCTTGCTCTATTATGCACAAAGAGGCAGCCAGCTGATAGGCCGACAATGCACGAAGTGACACGTGTACTCGGAAGCCTTGTGCTGTCAAACACCCCACCAAAGCAACTAGCTGCACTACCACCTGCTTCAAATCCATCTGCCAAAGTGCCATGCTACGTGGATGAGTATGCAAACCTCAAGACTCCACACTTGGTGAACTGCCCCTCAATGAGCACCTCAGATGCTCAACTCTTCCTCAAGTTTGGAGAAGTAATCTCTCAAAACAGTGAGTGA 2943 0.4135 MAFRFGVLILALVICLNFNSVESDDGATLLEIKKSFRDVDNVLYDWTDSPSSDYCAWRGISCDNVTFNVVALNLSGLNLDGEISPAIGKLQSLVSIDLRENRLSGQIPDEIGDCSSLKNLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPDLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTAFQVLDLSYNQLTGEIPFNIGFLQVATLSLQGNKLSGHIPPVIGLMQALAVLDLSCNLLSGSIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMSKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGPIPSNLSSCKNLNSLNVHGNKLNGSIPPSLQSLESMTSLNLSSNNLQGAIPIELSRIGNLDTLDISNNNLVGSIPSSLGDLEHLLKLNLSRNNLTGIIPAEFGNLRSVMEIDLSNNQLSGLIPDELSQLQNMISLRLENNKLTGDVASLSNCISLSLLNVSYNKLFGVIPTSNNFTRFPPDSFIGNPGLCGNWLNLPCHGARPSERVTLSKAAILGITLGALVILLMVLLAACRPHSPSPFPDGSFDKPVNFSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYSHYPQCIKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPTKKKKLDWELRLKIALGAAQGLAYLHHDCCPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKAATNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLVLSNTPPKQLAALPPASNPSAKVPCYVDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1919 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Gso17g1919 980 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 967 - -
Gso17g1919 980 SUPERFAMILY L domain-like 47 258 - -
Gso17g1919 980 Pfam Protein kinase domain 650 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1919 980 Gene3D Phosphorylase Kinase; domain 1 621 722 - -
Gso17g1919 980 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Gso17g1919 980 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Gso17g1919 980 SUPERFAMILY RNI-like 204 535 - -
Gso17g1919 980 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Gso17g1919 980 Gene3D Ribonuclease Inhibitor 443 568 IPR032675 -
Gso17g1919 980 Gene3D Ribonuclease Inhibitor 187 345 IPR032675 -
Gso17g1919 980 ProSiteProfiles Protein kinase domain profile. 647 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1919 980 SMART LRR_typ_2 329 353 IPR003591 -
Gso17g1919 980 SMART LRR_typ_2 449 472 IPR003591 -
Gso17g1919 980 SMART LRR_typ_2 473 496 IPR003591 -
Gso17g1919 980 SMART LRR_typ_2 497 524 IPR003591 -
Gso17g1919 980 SMART LRR_typ_2 210 234 IPR003591 -
Gso17g1919 980 SMART LRR_typ_2 90 114 IPR003591 -
Gso17g1919 980 SMART LRR_typ_2 401 425 IPR003591 -
Gso17g1919 980 SMART LRR_typ_2 162 186 IPR003591 -
Gso17g1919 980 SMART LRR_typ_2 281 305 IPR003591 -
Gso17g1919 980 CDD STKc_IRAK 653 916 - -
Gso17g1919 980 Gene3D Ribonuclease Inhibitor 346 442 IPR032675 -
Gso17g1919 980 Gene3D Ribonuclease Inhibitor 22 186 IPR032675 -
Gso17g1919 980 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Gso17g1919 980 SUPERFAMILY Protein kinase-like (PK-like) 625 913 IPR011009 -
Gso17g1919 980 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
Gso17g1919 980 Gene3D Transferase(Phosphotransferase) domain 1 723 924 - -
Gso17g1919 980 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 6 967 - -
Gso17g1919 980 SMART serkin_6 647 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1919 Gso-Chr17 38205847 38214431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1919 92 979 Receptor kinase-like Gene Family AT5G07180 65.242 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Gso17g1919 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1919 K20718 - gmx:100782307 1880.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0863 14 9768349 9776686 Gso17g1919 17 38205847 38214431 GST