Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1914 ATGGAACGAGAAGAGAAAAGATTTGTGTACCATATTTATTATTCTTCTGATGAGAATAACGAGAAAGAGGAAATAGAGGAGGAAATCTGCCATAGTGATAAGTATTTTCACTCGTTTTTTTTTCCCATTTTATTTTTCTGTCTTTTATTTTTTTTCAACGAATTAAGAAAACTTCGAAAACGTTTTAACAAAACAAAGCAGTGGAAGATAAGAACGTTAAAACAGTTACAAAAAAAAAAGGCCATGGGGTGGGGTCACCTCGGAAGACATGGCTCAGATTCCGGCGACGGCGCGGTTGCCGGTCCGAGCACCTCCTCCACCGAGCCACGGCGGTTCCCTCTCGCAGCTCAGCCGGAAATTATGCGCGCCGCCGAGAAGGACGATCAATACGCCTCTTTCGTTTACGAAGCCTGTCGCGACGCATTTCGCCACCTCTTTGGTACCAGAGTTGCAGTGGCTTACCAAAACGAGACGAAACTTTTAGGGCAGATGCTTTACTATGTTCTCACTACTGGCTCGGGACAGCAAACCCTGGGAGAGGAATACTGCGACATTACTCAGGTTGCTGGACCTTATGGACTTCCTCCTACTCCTGCGAGGCGTGCTCTTTTCATTGTATATCAGACTGCTATTCCATATATCACAGAACGAATTAGTTCTAGAATTGCTTCGCAAGGCATTGTCCTTACTGACTCAGAGTTTGCTGAGGGTTTTGGTGAAAATGCCCACAGTAGCCATAGTTCTCAGATTTCTGACGCCAGTCTTTCATCCTCGTCGGGACAATCTGTTACTACTCTGTCAAGGTTGAAGGGTAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTCCGTGAGTTGTTGCAGTTGGTTCTCCGTGCTAATCTCATGTTATTCTACTTTGAAGGCCTCTATTATCATATACCCAAACGTGCTGCAAGCATTCGTTATGTATTTATTGGAAAAGCATCAAATCAAAGACCCAGATACCAAATACTAGGAGTATTTCTGTTGATTCAACTTTGTATACTAGCTGCTGAAGGGCTGCGTCGAAGAAATTTTACTTCAATTGCTGGTTCAGTTCATCAAGCATCCTTCACAAACCATGATAGATCAGCAGGGCATGGTTTGCCTGTTTTAAATGAAGAGGGTACTTTGGCAACTCCAGATATTGACAAAGGAAGTTGGGTCTCTGAATCTTCATCTTCTGAGTATCATACAACTAGTGGGGTTAGCAAGTGCACACTTTGCCTGAGTAATCGTCAGCACCCAACTGCTACTTCCTGTGGTCATGTATTCTGCTGGAACTGTATCACGGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGTCGCACGCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCGGACTTCTAG 1428 0.4419 MEREEKRFVYHIYYSSDENNEKEEIEEEICHSDKYFHSFFFPILFFCLLFFFNELRKLRKRFNKTKQWKIRTLKQLQKKKAMGWGHLGRHGSDSGDGAVAGPSTSSTEPRRFPLAAQPEIMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQTAIPYITERISSRIASQGIVLTDSEFAEGFGENAHSSHSSQISDASLSSSSGQSVTTLSRLKGKLSAFWLHLVQRWPTMLPFVRELLQLVLRANLMLFYFEGLYYHIPKRAASIRYVFIGKASNQRPRYQILGVFLLIQLCILAAEGLRRRNFTSIAGSVHQASFTNHDRSAGHGLPVLNEEGTLATPDIDKGSWVSESSSSEYHTTSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1914 475 SMART ring_2 421 458 IPR001841 -
Gso17g1914 475 CDD RING-HC_PEX10 420 459 - -
Gso17g1914 475 SUPERFAMILY RING/U-box 420 464 - -
Gso17g1914 475 MobiDBLite consensus disorder prediction 241 259 - -
Gso17g1914 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 472 IPR013083 -
Gso17g1914 475 Pfam Zinc finger, C3HC4 type (RING finger) 420 464 - -
Gso17g1914 475 PANTHER PEROXISOME BIOGENESIS FACTOR 10 106 472 - -
Gso17g1914 475 Pfam Pex2 / Pex12 amino terminal region 127 358 IPR006845 -
Gso17g1914 475 ProSiteProfiles Zinc finger RING-type profile. 421 459 IPR001841 -
Gso17g1914 475 MobiDBLite consensus disorder prediction 240 259 - -
Gso17g1914 475 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 106 472 - -
Gso17g1914 475 MobiDBLite consensus disorder prediction 82 111 - -
Gso17g1914 475 ProSitePatterns Zinc finger RING-type signature. 436 445 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1914 Gso-Chr17 38079852 38089781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1914 388 471 C3H Transcription Factor Family AT3G58030 31.395 7.21e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1914 K13346 - gmx:100816042 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0868 14 9927807 9931750 Gso17g1914 17 38079852 38089781 GST