Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1903 ATGTTGGCTACCTCTGCATGTTTCCACTACTTAGAAACTTTTCTTCTTTTGTGCACCCTTATGATCCTTCCCATTGTTAAACCACAACCACCACTTTCCTTCAACATAACCAATTTCAACGACAGTACTGGAATCGCCAGCCTCATTGGATGTGTAGGCGTAGCCAGGATTGGCAACGGAACTATAGTACTCACCAACTCACTCAACAACAACAACGACAACAACAGTAGTTTTGATTTTGGACGAGCCATCTATGGCCAACCTATGCGCCTCAAAAACACTTCTAACGGACATGTCGTCGTAACGGATTTTTCTACTCGCTTTTCATTCTCTTCATTCTCCATCGATGGGTCCACTGAATCCGATTTCGGTGAAGGCTTCGCCTTCTACATGGCACCCATTGCCTACCATATTCCGCTCGGTTCAGGTGGTAGTCGTCTTGGGATATACGGTGACAAAGTACACGACCCTACTAACATTGTTGCTGTCGAATTTGACACCTTTCAAAACGTTGGTTTTGATCCACCACTAAACCAGCACGTGGGGATAAATAACAACTCTGTGGTTTCCCTGGCTTACGCAAGGTTGGATATTGAGGGCAACATAGGGAATATGGGGCATGTCTTGATAACTTACAATGCTTCTGCCAAACTCCTTGCTGTCTCATGGTTTTTTGAGGGAAGAAATAGTTCTAGTTCTGCGCCTGAAGCTTCTCTTTCACACCAGATTGACCTCGGGGAAATTCTACCAGAGTGGGTCACTGTTGGGTTTTCGGGTGGGAACGGGAATTCCAAAGGGAAAAATGTTATTCATTCCTGGGAATTCAGTTCAAATATGGATCTAAAATCCACTCGTAATCCAGAGGTAATAAACAAAGGAAGTGACGACATAACTAAATGTAAGTTTCAAGTCAAAGTAGTAGTTGTTGCAGTGACTTGCTCTATTATTATTTTTGTGGTCATGGTTATTAGTGCTTCTTGGTTCATTATCAACAAGAGAAGAACCGGTGATGGTTTTGGTTTGGATCATAGAGCAGCTATTCCTAGAAGGTTTAGTTATAACGAATTAGTTGCAGCCACCAACGGTTTTGCAGATGATGGAAGGCTCGGAGAAGGAGGCACTGGACAAGTTTATAAAGGGATTCTGGGCGATTTAGGGCGCGTGGTTGCAGTGAAAAGGATCTTTTCTGATGTTGAAGATTCAGAGAGAATGTTTACGAACGAGGTGAATATTATAAGTCGTCTTATACATAGAAACCTTGTGCAATTCTTGGGGTGGTGCCACGAGCAAGGTGAGCTATTACTGGTTTTTGAGTACTTGACTAATGGAAGTCTTGACACTCATATCTTTGGCAACAGAAGAACTTTGACATGGGATGTGAGATACAAGATAGCGTTAGGTGTGGCGAGAGCACTTCGATATCTTCATGAAGACGCGGAGCAGTGTGTTCTTCATAGGGATATAAAGTCAGCTAACATTTTGTTAGACACGGATTTCAATACTAAGGTTAGTGACTTTGGGATAGCAAAGTTGGTGGATCCAAGATTGAGGACTCAGAAGACAAAGGTGGTGGGGACGTATGGGTACCTTGCTCCAGAATATTTAAACGAAGGAAGGGCTAGCAAGGAATCTGACATGTATGGTTTTGGGGTAGTTGTGTTGGAGATAGCATGTGGAAGGAAGACTTACCAGGATGCGGAGCATAATCATGTGCCTTTGGTGAATTGGGTGTGGAAACATTATGTGGAAGGGAATATTTTGAATGTTGCTGATAAGGGATTGAACATGGATTTTGATGTGGATGAAATGACATGCTTGCTCACTGTGGGACTATGGTGTACCCTCCATAACCACAAGAAAAGACCACATGCAGAACAGGTTATTAGTGTTCTTAAGCAAGAAGCTACATTGCCAAAGCTTTCTACATGA 1929 0.4287 MLATSACFHYLETFLLLCTLMILPIVKPQPPLSFNITNFNDSTGIASLIGCVGVARIGNGTIVLTNSLNNNNDNNSSFDFGRAIYGQPMRLKNTSNGHVVVTDFSTRFSFSSFSIDGSTESDFGEGFAFYMAPIAYHIPLGSGGSRLGIYGDKVHDPTNIVAVEFDTFQNVGFDPPLNQHVGINNNSVVSLAYARLDIEGNIGNMGHVLITYNASAKLLAVSWFFEGRNSSSSAPEASLSHQIDLGEILPEWVTVGFSGGNGNSKGKNVIHSWEFSSNMDLKSTRNPEVINKGSDDITKCKFQVKVVVVAVTCSIIIFVVMVISASWFIINKRRTGDGFGLDHRAAIPRRFSYNELVAATNGFADDGRLGEGGTGQVYKGILGDLGRVVAVKRIFSDVEDSERMFTNEVNIISRLIHRNLVQFLGWCHEQGELLLVFEYLTNGSLDTHIFGNRRTLTWDVRYKIALGVARALRYLHEDAEQCVLHRDIKSANILLDTDFNTKVSDFGIAKLVDPRLRTQKTKVVGTYGYLAPEYLNEGRASKESDMYGFGVVVLEIACGRKTYQDAEHNHVPLVNWVWKHYVEGNILNVADKGLNMDFDVDEMTCLLTVGLWCTLHNHKKRPHAEQVISVLKQEATLPKLST* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1903 642 CDD lectin_legume_LecRK_Arcelin_ConA 32 279 IPR001220 GO:0030246
Gso17g1903 642 Gene3D Phosphorylase Kinase; domain 1 348 439 - -
Gso17g1903 642 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 283 IPR013320 -
Gso17g1903 642 Gene3D - 31 294 - -
Gso17g1903 642 ProSitePatterns Legume lectins beta-chain signature. 161 167 IPR019825 -
Gso17g1903 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Gso17g1903 642 ProSiteProfiles Protein kinase domain profile. 363 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1903 642 Pfam Protein kinase domain 365 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1903 642 Gene3D Transferase(Phosphotransferase) domain 1 440 641 - -
Gso17g1903 642 ProSitePatterns Legume lectins alpha-chain signature. 249 258 IPR000985 -
Gso17g1903 642 ProSitePatterns Protein kinases ATP-binding region signature. 369 392 IPR017441 GO:0005524
Gso17g1903 642 SMART serkin_6 363 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1903 642 Pfam Legume lectin domain 32 284 IPR001220 GO:0030246
Gso17g1903 642 PANTHER LECTIN RECEPTOR KINASE 33 641 - -
Gso17g1903 642 PANTHER - 33 641 - -
Gso17g1903 642 SUPERFAMILY Protein kinase-like (PK-like) 347 629 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1903 Gso-Chr17 37956935 37959272 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1903 13 642 Receptor kinase-like Gene Family AT5G10530 40.154 6.68e-147 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso17g1903 Pkinase 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1903 - - gmx:100796302 1240.33