Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1900 ATGTTGGCTACCTCGGAACATTTCCAGTACTACTTCAAAACTTCTCTTCTTTTCTGCTTCCTTTTTATTATCCTTCCAATTGTTCAACCACTCTCCTTTAACATACCTAACTTCAATGACACTGAAAGCGCAAACCTCATTGGAACGGCAGGCGTAGCCAAGATTGAGAACGGAACCATAGTGCTCAATCCACTCATCGAAAATGGAGTTGGACGAGCCATCTATGGCCAACCTTTGCACCTTAAAAACTCTTCTAATGGAAATGTCACAGACTTTTCTACTCGCTTTTCGTTCACTATTGGCGTGCCCACTCAAACCAACTATGGTGACGGCTTTGCCTTCTATGTGGCACCCCTTCTCTTCCAGATTCCGCAAAAATCAGAATCAGATGGTAGCACTCTCGGCCTATACGGTGACACCCAAAACAACATCGTTGCTGTCGAATTCGACACTTATGTAAACGATGATGATCCACCAGTGCAGCACGTAGGGATCAACAATAACTCTGTGGCATCCCTCAATTATAGCAGGTTTGATATTGAGAGCAACATAGGGAAAATGGGGCATGCGTTGATAACTCACAATGCTTCTGCCAAACTCCTTTCTGTCTCGTGGTTCTTTGAGGGAACTAGCTCTGGTTTTACACCTAATGCTAATTCTCTTTCGTACCATATTGACCTAGGGGAAACTTTACCAGAATGGGTCAATGTTGGGTTTTCAGGTGCAACCGGGTCGTCTAGTGAGCAAAATGTTATTCATTCCTGGGAATTTGCGTCAACTCTGAACTCCACCAGTTTAGAGACAAGAAGAGAAGATAGTTCTGATTTGGATAAAGCATCTATGCCAAGAAGGTTTGGTTACAACGAATTAGTTGCAGCCACCAACGGGTTCGCAGATGATAGAAGGCTCGGAGAAGGAGGTTATGGAGAAGTTTACAAAGGGTTTCTGAGTGATTTAGGGCGCGTGGTTGCGGTGAAAAGGATTTTTTCTGATGTTGAAAATTCTGAAGAAATATTTACGAACGAGGTGAAGATTATAAGTCGTCTCATACATAAAAATCTTGTTCAATTCATGGGGTGGTGCCACGAGGAAGGGAAGTTATTAATGGTTTTTGAGTACATGACTAATGGAAGCCTTGACAATCATCTCTTTGGCAACAGAAGAACTTTGACATGGGGTGTGAGATACAAGATAGCATTAGGCGTGGTGAGAGCACTTCGTTATCTTCATGAAGACGCGGAACAATGTGTTCTTCATAGGGATATTAAGTCGGCTAATGTTTTGTTGGACACTGATTTCAATACCAAGGTTAGTGACTTTGGGATGGCGAAATTGGTGGATCCAAGATTGAGGACTCAGAAGACAAAGGTGGTGGGGACATATGGGTACCTGGCTCCTGAATATGTAAAGGAAGGAAGGGCTAGCAAGGAATCTGACATGTACGGTTTTGGGGTTTTGGCTTTGGAAATAGCATGTGGAAAGAGGACTTATGAGGATAGGGAGCATAATCATGTGCCTTTAACAAATTGGGTATGGAAACATTATGTGGAAGGGAATATTTTGAATGCTGCCGATAAGGGATTGAAAGGGGATTACGATGTGAACGAAATGACATGTTTGCTCACGGTAGGAATATGGTGTAGCCACCCAGATCACAAGAAAAGGCCAAAGGCAGAACAGGTTATTAATGCCCTGAAGCAAGAAACGCCATTGCCATTGCTTTCTATGTGA 1731 0.4304 MLATSEHFQYYFKTSLLFCFLFIILPIVQPLSFNIPNFNDTESANLIGTAGVAKIENGTIVLNPLIENGVGRAIYGQPLHLKNSSNGNVTDFSTRFSFTIGVPTQTNYGDGFAFYVAPLLFQIPQKSESDGSTLGLYGDTQNNIVAVEFDTYVNDDDPPVQHVGINNNSVASLNYSRFDIESNIGKMGHALITHNASAKLLSVSWFFEGTSSGFTPNANSLSYHIDLGETLPEWVNVGFSGATGSSSEQNVIHSWEFASTLNSTSLETRREDSSDLDKASMPRRFGYNELVAATNGFADDRRLGEGGYGEVYKGFLSDLGRVVAVKRIFSDVENSEEIFTNEVKIISRLIHKNLVQFMGWCHEEGKLLMVFEYMTNGSLDNHLFGNRRTLTWGVRYKIALGVVRALRYLHEDAEQCVLHRDIKSANVLLDTDFNTKVSDFGMAKLVDPRLRTQKTKVVGTYGYLAPEYVKEGRASKESDMYGFGVLALEIACGKRTYEDREHNHVPLTNWVWKHYVEGNILNAADKGLKGDYDVNEMTCLLTVGIWCSHPDHKKRPKAEQVINALKQETPLPLLSM* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1900 576 CDD lectin_legume_LecRK_Arcelin_ConA 31 261 IPR001220 GO:0030246
Gso17g1900 576 Gene3D - 29 281 - -
Gso17g1900 576 Pfam Protein kinase domain 298 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1900 576 ProSitePatterns Legume lectins alpha-chain signature. 231 240 IPR000985 -
Gso17g1900 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Gso17g1900 576 ProSitePatterns Protein kinases ATP-binding region signature. 303 326 IPR017441 GO:0005524
Gso17g1900 576 SUPERFAMILY Protein kinase-like (PK-like) 281 565 IPR011009 -
Gso17g1900 576 Pfam Legume lectin domain 31 268 IPR001220 GO:0030246
Gso17g1900 576 PANTHER - 30 574 - -
Gso17g1900 576 PANTHER LECTIN RECEPTOR KINASE 30 574 - -
Gso17g1900 576 ProSitePatterns Legume lectins beta-chain signature. 145 151 IPR019825 -
Gso17g1900 576 Gene3D Transferase(Phosphotransferase) domain 1 374 573 - -
Gso17g1900 576 Gene3D Phosphorylase Kinase; domain 1 282 373 - -
Gso17g1900 576 ProSiteProfiles Protein kinase domain profile. 297 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1900 576 SMART serkin_6 297 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1900 576 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 267 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1900 Gso-Chr17 37917629 37919842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1900 16 574 Receptor kinase-like Gene Family AT5G10530 41.262 2.83e-156 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso17g1900 Pkinase 1.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1900 - - gsj:114391975 1168.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0879 14 10183611 10190311 Gso17g1900 17 37917629 37919842 GST