Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1899 ATGAATTTCTTAGCTCTATCAAACAAAGGAAGAAAAAAACAGCCACAACTGAGATTACTGGAGATGGTGATCACAGTTTTTCTCCTCGTGTTAGCCATTCCTTCACCTCTTAAAACAGCAGAATCACTAAATTTCAACATAACAAACTTCGCAAACTCCGAGAGTGCAAAAAACATGTTATACGTGGGTGACGGCGCTGTGAACAAGAACGGGTCCATAGAGCTCAACATAGTGGACTATGATTTCCGCGTTGGGAGAGCCTTGTACGGACAACCTCTGCGCCTTTGGGACTCATCTTCTGGTGTTGTAACCGACTTCTCCACGCGCTTCACTTTCACTATTGACAGAGGAAACAACAAAAGTGCTTCTTATGCTGACGGTTTCGCGTTCTACATAGCCCCTCATGGCTACCAGATTCCCCCAAACGCAGCTGGTGGCACTTTTGCACTCTTCAACGTCACCTCCAATCCCTTCATTCCCCGTAACCATGTGCTCGCGGTTGAGTTTGACACATTTAATGGCACAATTGACCCTCCCTTTCAGCACGTTGGCATAGACGATAACTCTCTCAAATCCGTCGCTACCGCCAAGTTTGACATCGACAAAAACCTCGGAAAGAAATGTAACGCTTTGGTAAACTATAATGCTTCCAACAGGACCCTCTTTGTGTCTTGGTCTTTTAACGGAGCCGCAACACCCAATTCGAAGAATTCATCAGTTTCTTACCAGATTGATGACCTCATGGACATTCTACCCGAGTGGGTGGATGTTGGGTTCTCCGCTTCAACTGGCGATCTCACTGAACGAAACATTATTCATTCGTGGGAGTTCAGTTCAACGTTGAATTCTTCCACTGTTTCGAATAACAATTCCTCGGACAATAATGGAGCGAAGGACCGGAACGGGTTGAGCTCGGTTGCGGTGGTTGCTGTGGCGGCGTGTGCGATTGTTTTGGTGGCAGCAGCCGCGAACTTTGCAGCTTGGGTGATAATCATGAAGAAGAGAAGGGGTAAGGGTGATTATTATGATAATGATGAAAGTGGACACACATCGGCTAAGTTTGATTTGGATAGGGAAACTATACCTAGGAGATTTGATTACAAAGAACTAGTTGTAGCTACCAATGGGTTCGCCGATGATACAAGGCTTGGACGAGGAGGTTCGGGACAAGTTTACAAAGGGGTTCTGAGTCATTTAGGAAGGGTGGTTGCAGTGAAAAGGATTTTCACTAACTCTGAAAATTCAGAAAGAGTTTTCATCAATGAGGTTAGGATCATAAGCCGTCTTATACACAGAAACCTTGTGCAGTTCGTAGGGTGGTGCCACGAGCAAGGAGAGTTTCTGTTGGTTTTTGAGTTCATGCCTAATGGAAGCCTCGACAGTCATCTCTTTGGGGACAAAAAAACTTTGCCCTGGGATGTCAGGTACAAGGTAGCATTAGGTGTGGCTTTGGCAATTCGTTATCTTCATGAGGATGCAGAGCAAAGTGTTCTACATAGGGATATTAAGTCGGCTAATGTGTTATTGGACACAGATTTTAGCACAAAGCTTGGTGATTTTGGGATGGCAAAGTTGTTGGATCCAAGGTTGAGGACTCAGAGGACAGGGGTAGTGGGGACTTATGGGTACCTTGCCCCAGAATATATCAACGGAGGTAGGGCTAGCAAGGAATCAGACATTTATAGTTTCGGGGTTGTGGCTCTTGAAATTGCATGTGGAAGGAGGACTTACAAAGACGGGGAGTTTCTTGTGCCTCTCGTGAACTGGATGTGGAAATTGTACGTGGAAGGGAAAGTTCTGGATGCTGTTGATGAGAGATTAAACAAGGAGTTTGATGTTGATGAAATGACAAGCTTGATTGTTGTAGGGTTGTGGTGTACTAACCCTAACAACAAGGAAAGGCCCACCGCTACACAAGTAATAAAAGTTCTTCAGCTTGAAGCGCCATTGCCCACGCTTCCACTTGATATGCATGATGGTCCTCCTCTTTCTTTAAACACGTATACGCATGCACAACCCCCTTATGATTCCTTGCAATCAGTACCCTTCACTAACAGCCTTCAAAGTGTTGGACGCTAA 2079 0.4526 MNFLALSNKGRKKQPQLRLLEMVITVFLLVLAIPSPLKTAESLNFNITNFANSESAKNMLYVGDGAVNKNGSIELNIVDYDFRVGRALYGQPLRLWDSSSGVVTDFSTRFTFTIDRGNNKSASYADGFAFYIAPHGYQIPPNAAGGTFALFNVTSNPFIPRNHVLAVEFDTFNGTIDPPFQHVGIDDNSLKSVATAKFDIDKNLGKKCNALVNYNASNRTLFVSWSFNGAATPNSKNSSVSYQIDDLMDILPEWVDVGFSASTGDLTERNIIHSWEFSSTLNSSTVSNNNSSDNNGAKDRNGLSSVAVVAVAACAIVLVAAAANFAAWVIIMKKRRGKGDYYDNDESGHTSAKFDLDRETIPRRFDYKELVVATNGFADDTRLGRGGSGQVYKGVLSHLGRVVAVKRIFTNSENSERVFINEVRIISRLIHRNLVQFVGWCHEQGEFLLVFEFMPNGSLDSHLFGDKKTLPWDVRYKVALGVALAIRYLHEDAEQSVLHRDIKSANVLLDTDFSTKLGDFGMAKLLDPRLRTQRTGVVGTYGYLAPEYINGGRASKESDIYSFGVVALEIACGRRTYKDGEFLVPLVNWMWKLYVEGKVLDAVDERLNKEFDVDEMTSLIVVGLWCTNPNNKERPTATQVIKVLQLEAPLPTLPLDMHDGPPLSLNTYTHAQPPYDSLQSVPFTNSLQSVGR* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1899 692 CDD STKc_IRAK 383 645 - -
Gso17g1899 692 Pfam Legume lectin domain 42 289 IPR001220 GO:0030246
Gso17g1899 692 SMART serkin_6 377 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1899 692 CDD lectin_legume_LecRK_Arcelin_ConA 43 281 IPR001220 GO:0030246
Gso17g1899 692 ProSiteProfiles Protein kinase domain profile. 377 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1899 692 ProSitePatterns Legume lectins alpha-chain signature. 251 260 IPR000985 -
Gso17g1899 692 SUPERFAMILY Protein kinase-like (PK-like) 360 669 IPR011009 -
Gso17g1899 692 ProSitePatterns Legume lectins beta-chain signature. 165 171 IPR019825 -
Gso17g1899 692 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 280 IPR013320 -
Gso17g1899 692 Gene3D Transferase(Phosphotransferase) domain 1 454 649 - -
Gso17g1899 692 Gene3D - 40 282 - -
Gso17g1899 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Gso17g1899 692 Pfam Protein kinase domain 379 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1899 692 ProSitePatterns Protein kinases ATP-binding region signature. 383 406 IPR017441 GO:0005524
Gso17g1899 692 PANTHER - 43 658 - -
Gso17g1899 692 Gene3D Phosphorylase Kinase; domain 1 362 453 - -
Gso17g1899 692 PANTHER LECTIN RECEPTOR KINASE 43 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1899 Gso-Chr17 37911542 37914942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1899 24 657 Receptor kinase-like Gene Family AT5G10530 44.720 1.83e-174 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso17g1899 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1899 - - gmx:100305427 1333.16