Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1898 ATGTTGCCCTTGAAAACTTGTCTTCTTCTTTTGCCCATCTTTATGATCCTTCTTCCAATAGTTCAACCACTCTCCTTCAACATAACTAACTTTAGCAACACCGAAAGCGCAAGCCCCATTGAATACGCCGGCGTAGCCAAGACTGAGAACGGAACCGTTGTGCTGAACCCACTCATCAATGGCGGAGTTGGACGAGCCATCTGTGTCCAACCACTACGCCTGAAAAAATCTTCTAACGAAGATGTCACAGACTTTTCAACTCGTTTTTCATTCTCTATCAACGCGCCTAATAAAACAAACTACGCTGATGGCTTTGCCTTCTATGTGGCACCACTTGCCTTGGCGTACCAAATTCCACCCAGTTCAGGTGGTTTACGTCTCGGGTTATACGATGACAGCAAACCCCAAAATAGCTTCGTTGCTGTTGAATTTGACCCTTATGTAAACGAGTTCGACCCACCAGTGCAGCATGTAGGGATCAACAATAACTCTATTGCATCCCTTGATTATAAGAAGTTTGATATTGAGAGAAACATAGGGAAGATGGGGCATGCGTTGATAACCTACAATGCTTCTGCCAAACTCCTTTCTGTCTCGTGGTTCTTTGATGGAACTAGTTCTGACGCTAATTCTCTTTCGCACCAGATTGACCTAGGGGAAATTATTATGTCAGACTGGGTCGCTGTAGGGTTTTCGGGATCAACCGGCACGACCAAAGAGGAAAATGTTATCCATTCATGGGAATTCAGTTCCAGTCTTGATTTAAGTTCCACCGATCCAGAGGTAAACAACGAAAATGATGATGACAACAAGATTACCAAATACAAGGTTCAGGTCAAAGTAGTAGTTGTTGTTGCAGTGGTTTGTTCTATTATTGTTGTTATCGTGGTTATTAGTGTTACTTGGTTGATCATCAAGAAGAGAAGAAGCGGTGATGGTTTTGGTTTGGATAGAGCAGCTATTCCAAGAAGGTTTGGTTATAAGGAATTAGTTGCAGCTACCAACGGGTTTGCAGATGATAGAAGGCTCGGAGAAGGAGGCTATGGACAAGTCTACAAAGGGTTTCTGAGTGATTTAGGGCGCGTGGTTGCGGTGAAAAGGATCTTTTCTGATGTTGAAGATTATGAGGAAATATTCACAAACGAGGTGAAGATTATAAGTCGTCTTATGCATAGAAACCTTGTGCAGTTCATGGGGTGGTGCCACGAGCAAGGGGAGGTATTACTGGTTTTTGAATACATGGTTAATGGAAGCCTTGACACTCATTTATTTGGTAGCAGAAGAACTTTGGCATGGGGTGTGAGATACAAGGTGGTGTTAGGTGTGGCGAGAGCACTTCGATATCTTCATGAAGACGCGGTGCAGTGTGTTCTTCATAGAGATATTAAGTCAGGTAATGTTTTGTTGGACACAGATTTCAATGCTAAGGTTAGTGACTTTGGGATGGCGAAATTGGTGGATCCAAGATTGAGGACTCAGAAGACAAAGGTGGTGGGGACATATGGGTACCTGGCTCCTGAATATGTAAAGGAAGGGAGGGCTAGCAAGGAATCTGACATGTACGGTTTTGGAGTTTTGGCTTTGGAAATAGCATCTGGAATAAGGACTTACCGGGATGGGGAGAATAATCATGTGCCTTTGACGATTTGGGTGTGGAAACATTACGAGGATGGAAATGTTTTGAATGTTGCCGATAAGGGATTGAACGGTGATTATGATGTGAATGAAATGACTTGCTTGCTCACTGTGGGATTATGGTGTACCCTACAAGAACACAAGAAAAGGCCAAATGCTGAACAGGTTATTAGTGTTCTTAAGCAAGAAAAACCATTGCCAGTGCTTTCAGCAATATGA 1854 0.4315 MLPLKTCLLLLPIFMILLPIVQPLSFNITNFSNTESASPIEYAGVAKTENGTVVLNPLINGGVGRAICVQPLRLKKSSNEDVTDFSTRFSFSINAPNKTNYADGFAFYVAPLALAYQIPPSSGGLRLGLYDDSKPQNSFVAVEFDPYVNEFDPPVQHVGINNNSIASLDYKKFDIERNIGKMGHALITYNASAKLLSVSWFFDGTSSDANSLSHQIDLGEIIMSDWVAVGFSGSTGTTKEENVIHSWEFSSSLDLSSTDPEVNNENDDDNKITKYKVQVKVVVVVAVVCSIIVVIVVISVTWLIIKKRRSGDGFGLDRAAIPRRFGYKELVAATNGFADDRRLGEGGYGQVYKGFLSDLGRVVAVKRIFSDVEDYEEIFTNEVKIISRLMHRNLVQFMGWCHEQGEVLLVFEYMVNGSLDTHLFGSRRTLAWGVRYKVVLGVARALRYLHEDAVQCVLHRDIKSGNVLLDTDFNAKVSDFGMAKLVDPRLRTQKTKVVGTYGYLAPEYVKEGRASKESDMYGFGVLALEIASGIRTYRDGENNHVPLTIWVWKHYEDGNVLNVADKGLNGDYDVNEMTCLLTVGLWCTLQEHKKRPNAEQVISVLKQEKPLPVLSAI* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1898 617 Gene3D - 22 275 - -
Gso17g1898 617 Pfam Legume lectin domain 24 257 IPR001220 GO:0030246
Gso17g1898 617 Pfam Protein kinase domain 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1898 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Gso17g1898 617 CDD lectin_legume_LecRK_Arcelin_ConA 24 249 IPR001220 GO:0030246
Gso17g1898 617 Gene3D Transferase(Phosphotransferase) domain 1 414 615 - -
Gso17g1898 617 Gene3D Phosphorylase Kinase; domain 1 322 413 - -
Gso17g1898 617 ProSitePatterns Protein kinases ATP-binding region signature. 343 366 IPR017441 GO:0005524
Gso17g1898 617 SUPERFAMILY Protein kinase-like (PK-like) 322 605 IPR011009 -
Gso17g1898 617 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 260 IPR013320 -
Gso17g1898 617 SMART serkin_6 337 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1898 617 ProSiteProfiles Protein kinase domain profile. 337 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1898 617 PANTHER - 23 615 - -
Gso17g1898 617 PANTHER LECTIN RECEPTOR KINASE 23 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1898 Gso-Chr17 37896734 37898866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1898 9 614 Receptor kinase-like Gene Family AT5G10530 41.111 4.06e-153 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso17g1898 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1898 - - gmx:100795245 1150.96