Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1894 ATGATCATCTGGGTCTTTCTTGATTATGGAGTCTACTACCTTCTGTCGATAATGGGAACGAATCTCAGCACTCCCAAAACTGAGAAGTCTTCTGATGATGGTGAAAATGAGCATCTTAGATATGGTTTATCATCTATGCAAGGCTGGCGTGCAACAATGGAAGATGCACATGCTGCACATCTTGATCTGGATGCATCCACTTCCTTTTTTGGTGTTTATGATGGTCATGGAGGTAAAGTGGTTGCAAAGTTTTGTGCCAAGTATCTTCACCAGCAGGTGCTCAAGAATGAAGCATACATAGCTGGAGATATAGGAACCTCTCTTAAGGAATCATTTTTCAGAATGGACGACATGATGCGTGGTCAAAGGGGATGGAGGGAATTAGCAGTTTTGGGTGATAAGATAGACAAGTTTAATGGTAAGATAGAAGGGTTGATTTGGTCTCCACGAAGCAGACATAGTAAGGAGCAAGATGATACTTGGGCCTTTGAGGAGGGCCCTCATTCTAATTTTGCTGGACCAACTTCAGGAAGCACTGCATGTGTTGCAATTATTAGAAACAACAAACTTTTTGTAGCAAATGCCGGTGATTCACGTTGTGTAGTATGTAGGAAGGGTCAGGCGTATGATTTGTCGATAGATCATAAACCTGATCTTGAGATTGAGAAGGAAAGAATCGTAAAAGCTGGTGGTTTTATTCATGCGGGACGAGTTAATGGGAGTTTAAGCCTTGCAAGAGCTATAGGTGACATGGAATTTAAGCAGAATAGATTCCTTTCTGCTGAAAAGCAAATGGTGACAGCCAATCCAGACATAAATACTGTTGAACTTTGTGATGAAGATGAATTTATAGTGCTGGCTTGTGATGGCATATGGGATTGCTTGTCAAGCCAACAATTGGTAGATTTTGTACGTCAACAACTGCTCTTGGAAACTAAACTTTCTGCCGTTTGCGAAAGAGTACTAGATCAATGTTTGGCACCAACAATTACTGTTGGTGATGGATGTGATAACATGACCATGATTTTGGTGCAGTTCAAAAAACTGGCCCAATCAAGTGCACCGGCATAA 1071 0.4136 MIIWVFLDYGVYYLLSIMGTNLSTPKTEKSSDDGENEHLRYGLSSMQGWRATMEDAHAAHLDLDASTSFFGVYDGHGGKVVAKFCAKYLHQQVLKNEAYIAGDIGTSLKESFFRMDDMMRGQRGWRELAVLGDKIDKFNGKIEGLIWSPRSRHSKEQDDTWAFEEGPHSNFAGPTSGSTACVAIIRNNKLFVANAGDSRCVVCRKGQAYDLSIDHKPDLEIEKERIVKAGGFIHAGRVNGSLSLARAIGDMEFKQNRFLSAEKQMVTANPDINTVELCDEDEFIVLACDGIWDCLSSQQLVDFVRQQLLLETKLSAVCERVLDQCLAPTITVGDGCDNMTMILVQFKKLAQSSAPA* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1894 356 PANTHER PROTEIN PHOSPHATASE 2C 15 352 IPR015655 GO:0004722|GO:0006470
Gso17g1894 356 SMART PP2C_4 30 344 IPR001932 -
Gso17g1894 356 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 15 352 - -
Gso17g1894 356 SMART PP2C_SIG_2 45 346 IPR001932 -
Gso17g1894 356 Pfam Protein phosphatase 2C 40 120 IPR001932 -
Gso17g1894 356 Pfam Protein phosphatase 2C 157 329 IPR001932 -
Gso17g1894 356 ProSitePatterns PPM-type phosphatase domain signature. 69 77 IPR000222 GO:0043169
Gso17g1894 356 Gene3D - 17 347 IPR036457 -
Gso17g1894 356 ProSiteProfiles PPM-type phosphatase domain profile. 40 346 IPR001932 -
Gso17g1894 356 CDD PP2Cc 40 346 IPR001932 -
Gso17g1894 356 SUPERFAMILY PP2C-like 21 348 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1894 Gso-Chr17 37860233 37866009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1894 18 348 PP2C-type Phosphatase Gene Family AT2G25070 76.133 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1894 K17499 - gmx:100793667 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0886 14 10396805 10402613 Gso17g1894 17 37860233 37866009 GST
Gso17g1894 17 37860233 37866009 Gso4g0514 4 4910158 4916340 PCT
Gso17g1894 17 37860233 37866009 Gso6g0508 6 4649763 4655844 PCT
Gso4g0514 4 4910158 4916340 Gso17g1894 17 37860233 37866009 PCT
Gso6g0508 6 4649763 4655844 Gso17g1894 17 37860233 37866009 PCT