Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1889 ATGGCTGAATTCACAGAAAATTTGCAAAACATTTCCTCATCATCTCCATTCTTAGACATTGATCCAAGCATGGAACTCCTAAACCAATTCATAGGGATGAACCAATTATATGTGCTAGACAACTCAAACTTGATGCCTTATTTCTCCTGTGATACCTTCTTGGGCCCCCAAGAACCTGAGTTTCCAGGAAACTTGGAAGAAGATTTTCCTTTTCTCTTCCATCATGTCAACCACAATGCACCTCCTGTTTCCCTCCCCATTTTCCAAGCAGAAAATGAGATCCATGAAGGTAATAAGAGGAAATCAATGGATCTTCTTGAGACCAGTTTTGCTAATTCAACTTCTGCAGTTTCTGAGACTGGAAGCAAGATCAAACATAGTTCTGGAAGAGGAAAGAGACTGAAAAACAATGTTACAGAAGAAGAGGAGAAAGCAAAGGAAGTGGTTAATGCCAGGGCTAGAAGAGGTCAAGCTACTGATAGTCACAATTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTAAGGTACTTACAAAATATTGTTCCAGGATGTTACAAGACAATGAGTATGGCAGTAATGTTAGATGAAATCATAAACTATGTGCAATCCTTGCAGCATCAAGTAGAGTTCCTTTCTTTGGAGCTTACAGCAGCAAGTACCTTTTATGACTTCAATTCCGAGATAGATGCTTTTGAAACAATGCAGAGATCAAGGGCATACGAGGCAAAAGAGTTAGGCAAGTATAAAAGAGAAGGACATGGAGGAGTTTCTCTCCTTCAACCAACATGGCACCTTTGA 807 0.3953 MAEFTENLQNISSSSPFLDIDPSMELLNQFIGMNQLYVLDNSNLMPYFSCDTFLGPQEPEFPGNLEEDFPFLFHHVNHNAPPVSLPIFQAENEIHEGNKRKSMDLLETSFANSTSAVSETGSKIKHSSGRGKRLKNNVTEEEEKAKEVVNARARRGQATDSHNLAERVRRGKINEKLRYLQNIVPGCYKTMSMAVMLDEIINYVQSLQHQVEFLSLELTAASTFYDFNSEIDAFETMQRSRAYEAKELGKYKREGHGGVSLLQPTWHL* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1889 268 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
Gso17g1889 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 224 IPR036638 GO:0046983
Gso17g1889 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983
Gso17g1889 268 Gene3D - 152 215 IPR036638 GO:0046983
Gso17g1889 268 PANTHER TRANSCRIPTION FACTOR BEE 1 2 267 - -
Gso17g1889 268 SMART finulus 163 213 IPR011598 GO:0046983
Gso17g1889 268 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 267 IPR024097 GO:0006355
Gso17g1889 268 Coils Coil 131 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1889 Gso-Chr17 37820922 37823167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1889 78 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 50.450 1.79e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g1889 HLH 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1889 - - gmx:100809974 533.102