Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1884 ATGGTCGTTCAACTCTTCAACACAGAAATCATAATGGATGAAAAGGTGGAAACTATTAAAGCTGAGTTAAAACGAGTGAGAGAGGAGAACAACACTCTAAGAATGATGCTTGAAGTTCTAAGCAGCAAGTACACAAAGCTTGAGACCCATCTTCAAGAAATAAACAAGACACAACACAAGGGCATGAGTTCAAATCAAATAGGGTCAGTAACAGTACCACCTATGTTTCAGACAAACAAGAGACCGAGACTAGAGTTTCCCACAGCAAAAAAGCCATTACAAATCTTTGTCAAAACACACCCCAAGGATGATAGTTTGATAGTAAAAGATGGCTATCAATGGAGGAAGTATGGGCAGAAGGTCACCAAAGACAATGCTTCACCAAGGGCTTATTTCAGGTGCTACATGGCTCCCATTTGCCCAGCAAAAAAGAAGGTGCAAAGATGTTTACATGATAAGTCAATCCTTGTTGCAATTTATGATGGAGAGCACAGCCATGGACCCCTTGATGAGTCCTCTTCGTCCACACCTAAAGGCTCATCACCAGTGGCTAATAATAAGTTACCTCTGATGACAAGCGTACCAAATGACAAAGAAGCCATGAACATTGACTTGGCTCTTTCAGGGTGGTCTCAAACAGATAGAAGACATTGTGAAGATGTCATGCAACAGAATAATAACAATGGTGGTAGCAACATCAAAATTGAAGAATATGTAAGTTCTCTAATCAAGGATCCAGACTTCACCATGTCATTAGCTGAAGCAGTTGCCCGCACCATCACTGGCCAGCAGAAGCAACAAGATCTAAACCTCAATTTGGAGCTTCCTGAAGAGTGA 837 0.4134 MVVQLFNTEIIMDEKVETIKAELKRVREENNTLRMMLEVLSSKYTKLETHLQEINKTQHKGMSSNQIGSVTVPPMFQTNKRPRLEFPTAKKPLQIFVKTHPKDDSLIVKDGYQWRKYGQKVTKDNASPRAYFRCYMAPICPAKKKVQRCLHDKSILVAIYDGEHSHGPLDESSSSTPKGSSPVANNKLPLMTSVPNDKEAMNIDLALSGWSQTDRRHCEDVMQQNNNNGGSNIKIEEYVSSLIKDPDFTMSLAEAVARTITGQQKQQDLNLNLELPEE* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1884 278 SMART WRKY_cls 108 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g1884 278 MobiDBLite consensus disorder prediction 166 187 - -
Gso17g1884 278 MobiDBLite consensus disorder prediction 169 187 - -
Gso17g1884 278 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 260 IPR044810 GO:0003700
Gso17g1884 278 SUPERFAMILY WRKY DNA-binding domain 104 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso17g1884 278 Coils Coil 16 57 - -
Gso17g1884 278 ProSiteProfiles WRKY domain profile. 103 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g1884 278 Pfam WRKY DNA -binding domain 109 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g1884 278 PANTHER WRKY TRANSCRIPTION FACTOR 49 12 260 - -
Gso17g1884 278 Gene3D WRKY domain 94 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1884 Gso-Chr17 37720213 37722527 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1884 22 268 WRKY Transcription Factor Family AT1G80840 35.125 6.40e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso17g1884 WRKY 5.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1884 - - gmx:100170679 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0896 14 10618324 10621002 Gso17g1884 17 37720213 37722527 GST
Gso17g1884 17 37720213 37722527 Gso4g0523 4 4977891 4979586 PCT
Gso17g1884 17 37720213 37722527 Gso6g0518 6 4719582 4721390 PCT
Gso4g0523 4 4977891 4979586 Gso17g1884 17 37720213 37722527 PCT
Gso6g0518 6 4719582 4721390 Gso17g1884 17 37720213 37722527 PCT