Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1871 ATGGTTTGTGAGATGGAGAGTGATTGTATTGAGGACATGGACATTGAAGTCCTCTCTTCAATGTGGCCTGAAGATATTGGCACTGATGTTGGAAAACAGTTCAATATAGAAAAGCCTGGAAGAGACCAAGATATGTTGGAGGAAGTCACAATCATAGAGGAGCCAACTATAGCTGATTTCCAGCGTCTCATGGAGCTTACAAATTACACAGATAAAGGGTCTTCTCAGCTGGCATACCTCATGCAACACTGGGAGTATAAGCAGGCTAACGCGGTTCGGCTTCTCAGAGAGGAACTTGACAACCTTAGTAAACAAAGGAAGGAAGTTGAGCTCAGGAAGTTGGAGATACTGAAAGACAATCGGTTCGAGGAAGAGAATTATGGTGGTGACAAGCGCCCGGTTTCTATATTGGATGAGGTTTACTATACATGGCAGGATGTGCCAGTGCCACTAAGGAAAAGTGATGTGGTTGTGCAAAACAAGAGGATTGAAATTGAAGCTGAGTATGACACTGTTGTGTATTGGAAACAGCGGGCGCTGCAGTTGGAAAAACAGTTGGAGGCAAGTGTCCAGAGGGAGCAGATACTAATGGACAAGTTGCAAGAAAGTGTAAAGAATCTTGAAAGGCAGTCTTCACCTGTGGAAGAACTATCTCAGATTCTGAAGAGAGCAGATAATTTCTTACATTTTATTCTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTACAATCATTTTCCGAGTTTACAAGAGGAGGACATCATAGGAAAAACAGATGTTGAAATTTTCACAGGATCCGGTGTTAAGGAATCTCAAGATTTCAAGAGGGAAGTAATGGAAAAAGGGTTGCCTGCAAAAAAAGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAGACATTCTTGATATACGTAGAACCTGTCTTTAGCAAAGCAGGAGAGACAATTGGAGTAAACTATATGGGAATGGAAATAACAGATCAGGTAAGAAAAAGAGAAAGAATGGCAAAGCTTAGGGAAGATATTGCAGTCCAGAAAGCAAAGGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTGTCTGGAGTTGTCAGCATGGCTGAGATTCTTTCCACCACGAAACTCGATCGGGAGCAAAGGCAGCTCTTGAATGTCATGATATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATATTAACCTTAGAAGGAAATGTGGCAGATGATATACCTGTTGAGGTCATTGGAGATGTTTTAAGGATTCGGCAGATTCTCACAAATTTAGTCAGCAATGCAGTAAAGTTTACACATGAAGGCAAAGTTGGCATAAACCTGTACGTTGTTACAGAACCACCTTTTGCCAAAGCAGAAGGCCATCAAAAGATGATCACAGAACAGTCTACAAATTCAGCAAATGGGGTGAAGGAAGAGAAACGTGCATCAACGCCGCGAAGCAACGATGATCAAAATTGTCTTGATGGTCAGAAAAACAATGACCATCCTAGCCAAAATCATGCAGTCAATGATGAATGCAGATCTTCAGTTAAAAGTGAATGCTCAATAAATGGAGATACTGAGGAGCAAACGCATTCAACTGAAACTGTGTGGATACGTTGTGATGTATATGACACAGGAATTGGAATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTAAGTGCTGATCATGCTCGAAAGTATGGTGGCACAGGGCTGGGACTAGCAATATGCAAACAGCTGGTTGAGTTAATGGGGGGTCGTTTAACAGTGACTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTTCCATACAAGGTTTCAACAGTTTGTGATGATTCTGATGACCCAGATGAGCTCTCAGATGTGGATGATAATGATGACGATACAACAGAAGGCTTCTTCCAATTCCAACCTCGCACTTTGGGCTCTCTCTTCTCTTCTAATGGACCTACCAGGCCACAAAATGTACTACCGGGATTCAGAAGCTCACACAACTTCAATGGTTTTTCAGAGAATTCTTTCTCATTCCTCACTACCAACATAATATCAAAAGGGACTAATTCAACCGAGGATGCTTCTTCAGTCATTGTTGATGCTCCAGAGATGTCTGAATCAACAGGTTCATCAAGTCACAGCCCTCAAACAAAGCATGAAAATGTAGTTAACACAAACAACCAGAATCAAGATAAGGCACATGCTCGGTTACAGAATGGTAGTGTAGACTCTTCTCAACATAAGGAGGCAATGACTCTAGGAACAATGTCAAGTGAACCACAACAAACATGTCAAGGTCAAGTGAAGACAGACATAACCTCCCAAAGTGTTATTAAGAGTAATAAATATACATCATCAGAAGTAACCAAATCCACATTAGGGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGAGGTTAGGATACGGCATGGATGTTGTGAATAATGGAGTGGAAGCCGTACGTGCAGTGCAGCGCCATACTTATGATGTCATTTTGATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTCGGTCTTATGAGGAAACAGGCAATTGGGAAGCTGCAAGAGAAGCTGGAATTGAACAATGTTCACCAGCTTCAAATGAATGTTCTGTACCACTTAAAAACCGGATCCACATCATTGCGATGACAGCAAACACAATGTCAGAGAGTGCTGACGAATGTTATGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACATTCCAAAAACTGAAAGATTGTCTAGAACAGTACCTGAGGTGA 3036 0.4094 MVCEMESDCIEDMDIEVLSSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIADFQRLMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDNRFEEENYGGDKRPVSILDEVYYTWQDVPVPLRKSDVVVQNKRIEIEAEYDTVVYWKQRALQLEKQLEASVQREQILMDKLQESVKNLERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGVNYMGMEITDQVRKRERMAKLREDIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGNVADDIPVEVIGDVLRIRQILTNLVSNAVKFTHEGKVGINLYVVTEPPFAKAEGHQKMITEQSTNSANGVKEEKRASTPRSNDDQNCLDGQKNNDHPSQNHAVNDECRSSVKSECSINGDTEEQTHSTETVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHCGSTFTFILPYKVSTVCDDSDDPDELSDVDDNDDDTTEGFFQFQPRTLGSLFSSNGPTRPQNVLPGFRSSHNFNGFSENSFSFLTTNIISKGTNSTEDASSVIVDAPEMSESTGSSSHSPQTKHENVVNTNNQNQDKAHARLQNGSVDSSQHKEAMTLGTMSSEPQQTCQGQVKTDITSQSVIKSNKYTSSEVTKSTLGPKILLVEDNKINVMVTQSMMKRLGYGMDVVNNGVEAVRAVQRHTYDVILMDVYMPVMNGLQTTKLIRSYEETGNWEAAREAGIEQCSPASNECSVPLKNRIHIIAMTANTMSESADECYANGMDSFVSKPVTFQKLKDCLEQYLR* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1871 1011 Gene3D - 862 1011 - -
Gso17g1871 1011 Coils Coil 92 119 - -
Gso17g1871 1011 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Gso17g1871 1011 Pfam Response regulator receiver domain 869 937 IPR001789 GO:0000160
Gso17g1871 1011 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1010 - -
Gso17g1871 1011 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1010 - -
Gso17g1871 1011 Gene3D - 439 684 IPR036890 -
Gso17g1871 1011 CDD HisKA 372 434 IPR003661 GO:0000155|GO:0007165
Gso17g1871 1011 MobiDBLite consensus disorder prediction 526 578 - -
Gso17g1871 1011 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 484 678 IPR003594 -
Gso17g1871 1011 SUPERFAMILY CheY-like 867 1011 IPR011006 -
Gso17g1871 1011 CDD REC_hyHK_CKI1_RcsC-like 869 1006 - -
Gso17g1871 1011 Gene3D PAS domain 214 350 - -
Gso17g1871 1011 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 438 IPR036097 GO:0000155|GO:0007165
Gso17g1871 1011 Gene3D - 361 438 - -
Gso17g1871 1011 Pfam His Kinase A (phospho-acceptor) domain 375 438 IPR003661 GO:0000155|GO:0007165
Gso17g1871 1011 ProSiteProfiles Response regulatory domain profile. 868 1010 IPR001789 GO:0000160
Gso17g1871 1011 ProSiteProfiles Histidine kinase domain profile. 380 680 IPR005467 -
Gso17g1871 1011 SMART REC_2 867 1006 IPR001789 GO:0000160
Gso17g1871 1011 Coils Coil 183 210 - -
Gso17g1871 1011 CDD HATPase_EvgS-ArcB-TorS-like 489 677 - -
Gso17g1871 1011 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 443 678 IPR036890 -
Gso17g1871 1011 SMART HKATPase_4 484 680 IPR003594 -
Gso17g1871 1011 MobiDBLite consensus disorder prediction 809 840 - -
Gso17g1871 1011 MobiDBLite consensus disorder prediction 553 578 - -
Gso17g1871 1011 PRINTS Bacterial sensor protein C-terminal signature 605 619 IPR004358 GO:0016310|GO:0016772
Gso17g1871 1011 PRINTS Bacterial sensor protein C-terminal signature 640 658 IPR004358 GO:0016310|GO:0016772
Gso17g1871 1011 PRINTS Bacterial sensor protein C-terminal signature 664 677 IPR004358 GO:0016310|GO:0016772
Gso17g1871 1011 MobiDBLite consensus disorder prediction 529 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1871 Gso-Chr17 37478524 37486462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1871 1 1010 Histidine Kinase Gene Family AT5G10720 57.915 0.0 1107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso17g1871 HATPase_c 2.5e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1871 - - gmx:100801640 1946.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0914 14 11206731 11214926 Gso17g1871 17 37478524 37486462 GST