Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1859 ATGGTGAAATCAGCCATGGCTAGTGTTGATTCTTCTTCTTGTAACAATGATTCATTTTCCTCTAACAACAACATTGATAGCTGTAAGATGTTCAAAGGGGTGAGGAAGAGAAAATGGGGCAAATGGGTGTCCGAAATTCGGCTTCCCAACAGCCGCGAGCGCATATGGTTGGGGTCGTATGACACCCAAGTGAAGGCTGCCAGGGCATTTGATGCCGCGCTTTATTGCCTACGTGGTCAAAGCGCGACATTCAATTTCCCTGACACGCCTCGACACTTGGAAACCAACATGGTATTGTCACGTGACAAACAGCCGCAACCTCTATCCCACCAAGAAATTCAAGAGGTAGCCGTGAAGTTCGCGAACAACGACGACCACCCTTTGGAGGAGGAGGAGTGTGCTTTCCAAAAACAAGAACAAGAACGCTCGTTAGAGGAGTCACAAAGTGATGAGTCTAAATCCGGCAATACAATAATGGAGATGAGCAACTTCCCTAGTATTTATGATGGTGAGACTCATAATAACAATGTGCAAGTGGACCAATTAAAAGGGGATTGGGACACCATGGATTGGACATTTTTGAACATGTTGGATGACTTGAATGGCTCGGATTTTGGCCTCTATGTGGGGCTAGACAAGATGCACCCGAGTGAATTTTTGTGTCCCATGACTCAAGCTCCACTACTTTATCATGGAGATGATGAAATTGAAGGTGATGATGATCATGATGCTTTTTCTAACCATTCCTTGCTTTGGAGTTGGAACTTTTGA 771 0.4501 MVKSAMASVDSSSCNNDSFSSNNNIDSCKMFKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQVKAARAFDAALYCLRGQSATFNFPDTPRHLETNMVLSRDKQPQPLSHQEIQEVAVKFANNDDHPLEEEECAFQKQEQERSLEESQSDESKSGNTIMEMSNFPSIYDGETHNNNVQVDQLKGDWDTMDWTFLNMLDDLNGSDFGLYVGLDKMHPSEFLCPMTQAPLLYHGDDEIEGDDDHDAFSNHSLLWSWNF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1859 256 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF016 17 256 - -
Gso17g1859 256 MobiDBLite consensus disorder prediction 132 149 - -
Gso17g1859 256 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Gso17g1859 256 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Gso17g1859 256 Coils Coil 128 148 - -
Gso17g1859 256 Pfam AP2 domain 31 79 IPR001471 GO:0003700|GO:0006355
Gso17g1859 256 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 256 - -
Gso17g1859 256 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Gso17g1859 256 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Gso17g1859 256 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Gso17g1859 256 MobiDBLite consensus disorder prediction 132 161 - -
Gso17g1859 256 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Gso17g1859 256 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1859 Gso-Chr17 37352720 37353807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1859 31 123 AP2-EREBP Transcription Factor Family AT1G19210 67.742 3.94e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso17g1859 AP2 1.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1859 - - gmx:102665533 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0920 14 11469087 11470195 Gso17g1859 17 37352720 37353807 GST