Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1854 ATGAGTACTAAAAAGAACACATGGAAGTCTGTGATCTTGATCCTAAGTTGTTACAAGGTTAAGTGTTCCTTGGAGGAATCAGAGAAACAGGTTTTGAAACAAGGTTCTTTCCAGAGGTTATGTCTATCAGATGTGAGCAATTCAAGCTCCACTCAGGCCATTGAAGACATTTCAATTTCATTTGCTGGCTCAAAGCTCTATGCATTCACACTTGAGGAGCTAAGGGAAGCAACAAACAGTTTCTCATGGAGTAACATGCTAGGTGAAGGAGGGTTTGGACCTGTCTACAAGGGTTTTGTTGATGACAAACTTAGGTCTGGTTTGAAGGCTCAGACTGTAGCTGTGAAAAGGTTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAACTAAGGCATCCACATCTTGTCAAGTTAATTGGGTACTGTTATGAGGATGAACATAGGCTTTTGATGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCCGAAGATACTCTGCTGCCATGCCATGGTCAACCAGGATGAAAATTGCATTAGGAGCAGCCAAAGGTCTTGCCTTCCTTCATGAAGCAGATAAGCCTGTAATATACCGCGATTTCAAAGCTTCGAACATTTTACTAGACTCGGATTTCACAGCTAAGCTCTCAGATTTTGGGCTAGCTAAGGATGGCCCTGAAGGGGAAGACACACATGTAACAACACGCATAATGGGAACACAAGGTTATGCTGCTCCTGAGTACATCATGACAGGTCACCTTACAACCAAGAGTGATGTGTATAGCTATGGGGTGGTGCTGTTGGAATTGCTGACAGGAAGACGAGTAGTGGATAAATCTCGGTCGAATGAAGGCAAGAGCTTGGTGGAATGGGCAAGGCCTTTGTTGAGAGATCAGAAAAAGGTGTACAATATCATAGATCGTAGACTAGAGGGGCAATTTCCCATGAAAGGAGCCATGAAAGTTGCTATGTTGGCTTTTAAATGCTTGAGTCATCACCCAAATGCAAGGCCAACTATGAGTGATGTGATTAAGGTATTGGAGCCACTTCAGGACTATGATGATGTTTTCATTGGACCATTTGTGTATGTTGCCGTAAGTGAAACTGGTGACAAACATAAAATATAG 1161 0.4307 MSTKKNTWKSVILILSCYKVKCSLEESEKQVLKQGSFQRLCLSDVSNSSSTQAIEDISISFAGSKLYAFTLEELREATNSFSWSNMLGEGGFGPVYKGFVDDKLRSGLKAQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDEHRLLMYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGEDTHVTTRIMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSRSNEGKSLVEWARPLLRDQKKVYNIIDRRLEGQFPMKGAMKVAMLAFKCLSHHPNARPTMSDVIKVLEPLQDYDDVFIGPFVYVAVSETGDKHKI* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1854 386 Pfam Protein tyrosine and serine/threonine kinase 83 357 IPR001245 GO:0004672|GO:0006468
Gso17g1854 386 ProSiteProfiles Protein kinase domain profile. 81 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1854 386 PANTHER KINASE 1B 21 383 - -
Gso17g1854 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gso17g1854 386 Gene3D Transferase(Phosphotransferase) domain 1 164 368 - -
Gso17g1854 386 CDD STKc_IRAK 87 361 - -
Gso17g1854 386 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
Gso17g1854 386 PANTHER OS01G0588500 PROTEIN-RELATED 21 383 - -
Gso17g1854 386 Gene3D Phosphorylase Kinase; domain 1 42 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1854 Gso-Chr17 37290478 37293425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1854 69 358 Glycoside Hydrolase AT3G07070 52.560 1.78e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso17g1854 PK_Tyr_Ser-Thr 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1854 - - gmx:100802636 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0929 14 11725300 11728254 Gso17g1854 17 37290478 37293425 GST