Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1851 ATGTCGTCGGTTTACGTTCTAGAGCCTCCGACGAAGGGGAAGGTGGTGGTGAACACTACGCGCGGTCCTTTGGACATTGAGCTGTGGCCGAAAGAGGCTCCGAAGGCCGCGAGGAACTTCGTTCAGCTCTGCCTCGAAAACTATTACGACAACACCATCTTCCACCGCATCATCAAGGACTTCCTCGTCCAAAGCGGCGACCCCACCGGCACCGGCACCGGTGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCACGTCTGAAATTCAAGCACAGAGGAATAGTTGCAATGGCCAATGCCGGAACTCTGAATTCCAATGGAAGTCAGTTTTTCATCACTCTCGACCGCTGTGATTGGCTTGATCGCAAGCATACCATTTTTGGAAAAGTGACGGGAGATACAATGTATAATCTTTTGAGGCTGGGTGAACTTGAAACTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAAAAACTTCAGATTGAAGCTAAAGCTGATACAAAAAATAAAGAGTCAGGGAAAAAAGGCGTAAAAAAATTGAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGAATTGGCATCGGTGAAGCAAAAGATTAAGAGCAGTCACGATGTCTTGAACGATCCTCGTCTTCTAAAGGAAGATACTCTTAATAATGAACTGAGTTCATCAAGAAGAGATATGCAATTATCTGTAAGGGATGCACTTAACTCAAAGAAAGACGAGCCTCAGAAAGATTCAGATGCTGGTAGCATGGCATGTCTTAATTTCAGTGATGACGATGAAGCAGATTTTGATGCAAGAATGCGCATGCAAATACTCAAAAAGAGGAAGGAGTTGGGTGATCTCCCTCCCAAGCCAAAGTTGCGAAATGGAAGGTCCAGTCCAGAGAACCATGATACGTCGTCTGCAGCCAGGTCCAATGCTGTAAGTGTTGATGAGGATCAACCAAAGGTGGAAAAATTGTCCTTGAAGAAAAAGGGAGTTGGATCTGAAGCAAGAGCTGAACGAATGTCTAATGCAGATGCAGATTTGCAACTATTGAATCAAGCTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGCAGACTTCAAGGGCGTGAAGATGAAGTTCTGGCTAAACTTGAAAAATTTAAGAATTCTTTATCAGCAAAGGCGACACCCCCAACTGATGAATCTGAAGACGTTAGTAATGAGGAATTGTCAGACTGGAAAGGTGTTAGTTTAAAGTTTGCCCCACAGACTGGCAAGGACCGCATGTCTCGCAATGAAGACCCAAACGACTATGTTGTGCATGACCCTCTTCTGGAGAAGGGGAAAGAGAAGTTCAATAGGATGATAGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGTTCCCTTACTTGA 1479 0.4435 MSSVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAARNFVQLCLENYYDNTIFHRIIKDFLVQSGDPTGTGTGGESIYGGVFADEFHSRLKFKHRGIVAMANAGTLNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGELETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKLQIEAKADTKNKESGKKGVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEDTLNNELSSSRRDMQLSVRDALNSKKDEPQKDSDAGSMACLNFSDDDEADFDARMRMQILKKRKELGDLPPKPKLRNGRSSPENHDTSSAARSNAVSVDEDQPKVEKLSLKKKGVGSEARAERMSNADADLQLLNQAERGRQLQKQKKRRLQGREDEVLAKLEKFKNSLSAKATPPTDESEDVSNEELSDWKGVSLKFAPQTGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMIAKQKRREREWAGSSLT* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1851 492 MobiDBLite consensus disorder prediction 304 462 - -
Gso17g1851 492 MobiDBLite consensus disorder prediction 446 462 - -
Gso17g1851 492 Gene3D - 2 182 IPR029000 -
Gso17g1851 492 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Gso17g1851 492 MobiDBLite consensus disorder prediction 391 405 - -
Gso17g1851 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Gso17g1851 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Gso17g1851 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Gso17g1851 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Gso17g1851 492 MobiDBLite consensus disorder prediction 341 367 - -
Gso17g1851 492 CDD cyclophilin_CeCYP16-like 8 179 - -
Gso17g1851 492 MobiDBLite consensus disorder prediction 260 275 - -
Gso17g1851 492 Coils Coil 206 233 - -
Gso17g1851 492 MobiDBLite consensus disorder prediction 324 338 - -
Gso17g1851 492 MobiDBLite consensus disorder prediction 244 285 - -
Gso17g1851 492 SUPERFAMILY Cyclophilin-like 14 180 IPR029000 -
Gso17g1851 492 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Gso17g1851 492 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 202 - -
Gso17g1851 492 Coils Coil 376 396 - -
Gso17g1851 492 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 202 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1851 Gso-Chr17 37235841 37242408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1851 9 172 U-box Gene Family AT5G67530 46.341 3.29e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1851 K12737 - gmx:100793148 940.258