Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1841 ATGGCAAACTACCACCGCAACAACGTCGAAAACGTCGTCCTCGGCCGCCACCACCACCACAGCCACCGTTCCAAGTCCGCCTCCGTCGCCGGCCACACCTTCCGCCTATGGAATGCCGCCTCCTTCCGCCGCATCATCTTCGACGCCGTCAGCTGCGGCGCCAGCTCCCGCTACGCCGCGAGATCCAACATCTCCGACGAGAAACAACACCTCCAACAAAAACAACAACATCATAAGACGACGTCGATGAAGAACAATGCGAAGTCGGAGAAGCTCTCGGATCTGCTGAGCATTGCGGAAGCCGAAACCGACGTGGAAACGAAGAAGAAAGAAGAGAAGCTGGAAGACTTGAAGCGCCTCGTGAAGGAGCTTCAGCAGCACGAAGAAGATTCGACGAAGAATAAAAAAAGTGAAGCTGCGGCGAAAGTGAGGTTGCTGGCGAAGGAGGAGTTGGAAGTAAGAGGAACGCTCGCTATGTTAGGTGCCATTCCTCCTCTCGTCGCAATGCTCGATGAAACCGAACAAAACGACGTCAATTCGCTCGTCTCTTCGCTCTACGCGCTGCTCAACCTCGGCATTGGAAACGACGCGAACAAAGCAGCTATTGTGAAAGTTGGGTCTGTTGAGAAGATGCTCAAGTTGATTGAATCTCCAGATGGTCTAGATTCTTCGGTTTCTGAAGCAATTGTTGCAAATTTCCTTGGATTAAGTGCTTTGGATTCGAATAAGCCCATAATTGGGTCTTCGGCTTCAATTTATTTCTTAGTTAGAACCCTTCAGAGTTTAGATGATGAGAGTAGTCCCCAAGCCAAACAAGATGCTCTCCGAGCATTGTACAATCTTTCAATCTTCCCAGGGAATGTTGCATTCATTTTGGAGACTGATTTGGTAGTGTTTCTGGTGAACTCAATAGGGGACATGGAGGTAACTGAAAGAACCCTTGCAACTCTCAGCAATATAGTGTCGACCCGCGAGGGTAGAAAGGCGATCAGCGCTGTGCCGGATTCGATCCCAATCTTGGTGGATGTGTTGAATTGGACGGATTCTCCGGAATGCCAGGAGAAGGCGTCGTACATTTTGATGGTTATGGCACACAAGTCCTATGGTGACAAGCAGGCCATGATTGAGGCAGGGATTGCGTCATCACTGCTTGAGTTGTCCCTTTTGGGTTCCACATTGGCTCAGAAAAGGGCATCAAGGATATTGGAGATTCTGAGGGTGGACAAAGGGAAGCAGGTCTCTGGGAGCTATGGATTGGGTGCAGCTGTCTCTGCCCCTATCTGTGGCTCTTTGTCGGGGAAGCCGGACGGAGGAGGAGGAAGAGAGTGTTTTGAGGAGGACGAAGAGATGATGAGCGAGGAGAAGAAAGCAGTGAAGCAATTAGTCCAGCAGAGCTTGCAGAACAACATGAGGAAAATCGTAAAGAGGGCCAATTTGCCTCATGATATCGTGCCATCAGATCATTTTAAGTCACTCACTTTGAGTTCTACTTCAAAGAGCCTGCCATTTTGA 1512 0.498 MANYHRNNVENVVLGRHHHHSHRSKSASVAGHTFRLWNAASFRRIIFDAVSCGASSRYAARSNISDEKQHLQQKQQHHKTTSMKNNAKSEKLSDLLSIAEAETDVETKKKEEKLEDLKRLVKELQQHEEDSTKNKKSEAAAKVRLLAKEELEVRGTLAMLGAIPPLVAMLDETEQNDVNSLVSSLYALLNLGIGNDANKAAIVKVGSVEKMLKLIESPDGLDSSVSEAIVANFLGLSALDSNKPIIGSSASIYFLVRTLQSLDDESSPQAKQDALRALYNLSIFPGNVAFILETDLVVFLVNSIGDMEVTERTLATLSNIVSTREGRKAISAVPDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGIASSLLELSLLGSTLAQKRASRILEILRVDKGKQVSGSYGLGAAVSAPICGSLSGKPDGGGGRECFEEDEEMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFKSLTLSSTSKSLPF* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1841 503 MobiDBLite consensus disorder prediction 76 92 - -
Gso17g1841 503 Gene3D - 84 419 IPR011989 -
Gso17g1841 503 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 503 - -
Gso17g1841 503 SUPERFAMILY ARM repeat 117 405 IPR016024 -
Gso17g1841 503 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 503 - -
Gso17g1841 503 SMART arm_5 150 193 IPR000225 GO:0005515
Gso17g1841 503 SMART arm_5 239 283 IPR000225 GO:0005515
Gso17g1841 503 SMART arm_5 284 322 IPR000225 GO:0005515
Gso17g1841 503 SMART arm_5 326 365 IPR000225 GO:0005515
Gso17g1841 503 SMART arm_5 195 238 IPR000225 GO:0005515
Gso17g1841 503 Coils Coil 107 134 - -
Gso17g1841 503 MobiDBLite consensus disorder prediction 64 93 - -
Gso17g1841 503 Coils Coil 444 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1841 Gso-Chr17 36992034 36994597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1841 6 420 U-box Gene Family AT2G23140 28.837 1.19e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1841 - - gmx:100788575 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0955 14 12545713 12549167 Gso17g1841 17 36992034 36994597 GST
Gso17g1841 17 36992034 36994597 Gso4g0529 4 5077181 5079027 PCT
Gso17g1841 17 36992034 36994597 Gso6g0525 6 4824826 4826801 PCT
Gso4g0529 4 5077181 5079027 Gso17g1841 17 36992034 36994597 PCT
Gso6g0525 6 4824826 4826801 Gso17g1841 17 36992034 36994597 PCT