Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1837 ATGCTGGGTCATGATGATAAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCATATGATGAATGCTATTGGGAGCTCAAGTCAGATATCTCTGCATTTCAAACAGAGATAGAAAGATTTAACACCTTTAAGTCTAGATCAAGGAAACTTTTGTCTAGTAAGAAAAAGCGTAGTGTTGAGGATGATGCTGAACTGAATAAGCAGCAGAAAGAATTTCTACAGTATGAACATAGTCTTCAATTTCTTTCAGGGGGTGCACTGCATTCATATCAACTTGAAGGATTGAACTTCTTGCGATTCTCATGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTCGGCAAAACCATACAGAGTATTGCTTTCCTAGCATCCCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTACGAAACTGGGAACGTGAATTTGCAACTTGGGCTCCTCAAATGAATGTTGTTATGTATTTTGGATCTGCCAAAGCTCGTGCTTTTATTAGAGAGTATGAGTTTTACTTTCCAAAGAATCAAAAGAGGATCAAGAAAAAAAAATCTAGACAGATAGTTAACGAAAGCAAACAAGAAAGGATAAAGTTTGATGTCCTTTTGACATCATATGAGATTATAAATTCTGATACATCATCATTGAAACATATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCATCGTCTCAAAAACAAGGACTCTAAATTATTTTCTTCATTGAAGCAATATTCTAGCAAACATCGTGTGCTTTTAACAGGAACTCCACTTCAGAACAATCTGGATGAGCTTTTTATGCTTATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCGAGAGGAGCAGATTTTGAGACTACATAAAATGTTGGCGCCACATCTCTTGCGAAGACTGAAGAAAGATGTCATGAAGGAACTTCCTCCAAAAAAGGAACTTATTTTGCGTGTTGAGTTATGCAGCAAACAGAAAGAATACTACAAGGCAATTTTGACCCGTAATTATCAGATATTAACCCACCAAGGTGGTGCACAAATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCCTATATGTTACAAGGAGTTCAACCAGACCTAAAGGATGAAAAAGAATCATACAAGCAATTTCTTGAATCGTCTGGGAAGTTGCAATTGTTGGATAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTTCTCATATATTCCCAATTTCAGCACATGCTGGATTTGCTTGAAGATTACTGTGTTTACAAGCATTGGCAGTATGAGAGGATAGATGGCAAGGTTGGAGGAGCTGAAAGACAAGTACGGATAGATCGGTTTAATGCTAAAAATTCTTCAAGATTTTGTTTCATACTTTCTACTAGAGCTGGGGGATTGGGAATAAACCTAACAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGATGATTTATAGGCTTATAACGAGGGGAACAATTGAGGAAAGGATGATTCAGATTACAAAGAAGAAAATGGTGTTAGAACACCTGGTTGTAGGGAGTCTAAAGGCTCAAAACATTAACCAGGAAGAGTTAGATGATATCGTAAGGTATGGCTCAAAGGAGTTGTTTGCTGATGAGAATGATGAAGTGGGCAAATCTCGCCTAATTCATTATGATGATGAAGCAATAGACAGACTGCTGGATCGAGATCAACTTGGAGATGAAAAGGCTGCTGTAGATGGTGAAGATGAAGATGGATTTTTGAAGGCCTTTAAGGTGGCAAATTTTGAATATGTTGAGGAAGTTGAGCCATCAGAGGAGGTGACACAAAATAGAGCAAAGGAGAACCAATCCTCTGTGACTAGTTCAAAAAGAACAAATTACTGGGAAGAGTTGTTGAAAAATGCATATGAAGAGAATAAAGTTGAAGAGTTAAATGCCTTGGGCAAAGGCAAGCGAAACAGAAATAAATGGCTGGGGGGCGGTTTTAGTGGTTTGGAAGATGTAAGCTCTGATGATGAAGATGACAGTTACAAAGAGGATCTTACTGATGATGATTCAAATTCAACTGAAACTACTACTACTAGAAGGCCTCACAAAAAGAAAGCTCGTGATAGCATGGGGCCACTTCCTTTAATGGAAGGTGAAGGAAGATCTCTGAAAGTACTTGGTTTTACTCAAAATCAAAGGGCTGCATTTGTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAAGAATTTACTTCCCGCATGAAACAGAAGAGTTATGAAGAAATCATGGAGTATGGAAAACTTTTCTTGTCTCATATTGCAGAAGATATAACAGATTCCCCTACATTCACAGATGGTGTTCCAAAAGAAGGACTTCGAATAAAAGATATACTTGCAAGGATTGCAGTTCTGCTCTTGATAAGGGACAAAGTGAAGTTTGCTTCAGAAAATCCTCGAACTCGGGTTTTTTCAGATGATATCTTATTACGCTATGCAGGTTTGAAGGGGGCAAAAATATGGAAGGAGGAGCATGATTTGGTGTTACTGCATGCTGTGCTGAAGCATGGCTATGGAAGGTGGCATGATATTGTTGATGATAAGGATCTGAAGATTCAAGAGGTCATCACTCAGGAGTTGAATATTTCATTTACAAAATTACCAGTTCATGGACAAGTTTGCTCTCAAGTGTACAATAGTGCAAATATGACAAATGTGGAGTCCAGCTGCAACCCTTCTGCTGAAACTGATAAGAGTGACATAGCAGATGATGGTGCAAATATGACAAATGTGCAATCGAGCTGCAACCAATCTAAGGAGAGTGGTGTGAGTAACATTGCTGCTGAAGGTGCACATGGTTCTGGTGATTCTGGGAATCAAGCACAGTTTAGAGACATGCAGAGAAGACATATTGAGTTTATAAAAAAAAGGTTTCTTCTCTTGGAAAAAGGTCTCAACGCCGAGTACCAGAAAGAATACTTTAGTGATTTGAAAGTAAATGAGGTGGAAAATGATGAACCTAAAGCTGACATTCAAATGATTGGTCAACTGCCTCGAATCGAAGCAATAGGTTCAGAAGAAATTTCTATTTCTGCATATGATTGTGATCCTGATCGATTGCAATTAGTTTGTCTTTACAACAAGATGTGCAAGACTGTGGAGGAAAACACCATGAATTTAATTCAGGAGTTATCGGCAAGAGAACTAACAGAAGTCAACGTTATTAAGAACTTCCATCAACTGGAAATCATTTCAGCGGATGTCAACAGAATTCTAAATCAACAAAATAAACGTTCAGCTGAAACGCAAGTACTAAATTCTAACAAATCGAATACTTTATCACAGACTGAAGTTGTGGGCTCTGGATTGCTGTCTAGTTCTCAAGATAAATGCAAAGCTGAAGATGTTGTAATGGTGTGTGAACCTAAAAAAGAAAGTGATCAGGTTACCAAGATTTCCCAAGACATGGGGAACTGA 3594 0.3829 MLGHDDKKEYLVKWKELPYDECYWELKSDISAFQTEIERFNTFKSRSRKLLSSKKKRSVEDDAELNKQQKEFLQYEHSLQFLSGGALHSYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGSAKARAFIREYEFYFPKNQKRIKKKKSRQIVNESKQERIKFDVLLTSYEIINSDTSSLKHIKWECMIVDEGHRLKNKDSKLFSSLKQYSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRLKKDVMKELPPKKELILRVELCSKQKEYYKAILTRNYQILTHQGGAQISLINVVMELRKLCCHPYMLQGVQPDLKDEKESYKQFLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCVYKHWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFILSTRAGGLGINLTTADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEERMIQITKKKMVLEHLVVGSLKAQNINQEELDDIVRYGSKELFADENDEVGKSRLIHYDDEAIDRLLDRDQLGDEKAAVDGEDEDGFLKAFKVANFEYVEEVEPSEEVTQNRAKENQSSVTSSKRTNYWEELLKNAYEENKVEELNALGKGKRNRNKWLGGGFSGLEDVSSDDEDDSYKEDLTDDDSNSTETTTTRRPHKKKARDSMGPLPLMEGEGRSLKVLGFTQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKSYEEIMEYGKLFLSHIAEDITDSPTFTDGVPKEGLRIKDILARIAVLLLIRDKVKFASENPRTRVFSDDILLRYAGLKGAKIWKEEHDLVLLHAVLKHGYGRWHDIVDDKDLKIQEVITQELNISFTKLPVHGQVCSQVYNSANMTNVESSCNPSAETDKSDIADDGANMTNVQSSCNQSKESGVSNIAAEGAHGSGDSGNQAQFRDMQRRHIEFIKKRFLLLEKGLNAEYQKEYFSDLKVNEVENDEPKADIQMIGQLPRIEAIGSEEISISAYDCDPDRLQLVCLYNKMCKTVEENTMNLIQELSARELTEVNVIKNFHQLEIISADVNRILNQQNKRSAETQVLNSNKSNTLSQTEVVGSGLLSSSQDKCKAEDVVMVCEPKKESDQVTKISQDMGN* 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1837 1197 SMART ultradead3 83 296 IPR014001 -
Gso17g1837 1197 MobiDBLite consensus disorder prediction 708 722 - -
Gso17g1837 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 576 IPR027417 -
Gso17g1837 1197 Gene3D - 80 329 IPR038718 -
Gso17g1837 1197 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 574 IPR001650 -
Gso17g1837 1197 Pfam Helicase conserved C-terminal domain 410 523 IPR001650 -
Gso17g1837 1197 Pfam CHD subfamily II, DUF1087 646 696 IPR009463 -
Gso17g1837 1197 Coils Coil 290 310 - -
Gso17g1837 1197 SMART helicmild6 439 523 IPR001650 -
Gso17g1837 1197 MobiDBLite consensus disorder prediction 962 980 - -
Gso17g1837 1197 Pfam Chromo (CHRromatin Organisation MOdifier) domain 5 41 IPR023780 -
Gso17g1837 1197 MobiDBLite consensus disorder prediction 723 738 - -
Gso17g1837 1197 SUPERFAMILY Chromo domain-like 5 43 IPR016197 -
Gso17g1837 1197 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 9 1133 - -
Gso17g1837 1197 Gene3D - 3 42 - -
Gso17g1837 1197 Pfam CHD subfamily II, SANT-like domain 733 865 IPR009462 GO:0003677|GO:0006338
Gso17g1837 1197 MobiDBLite consensus disorder prediction 645 664 - -
Gso17g1837 1197 Pfam SNF2-related domain 106 387 IPR000330 GO:0005524|GO:0140658
Gso17g1837 1197 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 285 IPR014001 -
Gso17g1837 1197 CDD SF2_C_SNF 408 534 - -
Gso17g1837 1197 MobiDBLite consensus disorder prediction 703 752 - -
Gso17g1837 1197 ProSiteProfiles Chromo and chromo shadow domain profile. 1 55 IPR000953 -
Gso17g1837 1197 Gene3D - 835 961 - -
Gso17g1837 1197 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED 9 1133 - -
Gso17g1837 1197 Gene3D - 330 554 IPR027417 -
Gso17g1837 1197 SMART DUF1086_2 714 868 IPR009462 GO:0003677|GO:0006338
Gso17g1837 1197 MobiDBLite consensus disorder prediction 947 980 - -
Gso17g1837 1197 Pfam CHDCT2 (NUC038) domain 878 911 IPR012957 -
Gso17g1837 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 320 IPR027417 -
Gso17g1837 1197 SMART DUF1087_2 643 712 IPR009463 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1837 Gso-Chr17 36830585 36854149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1837 109 584 RAD5 or RAD16-like Gene Family AT1G02670 25.000 1.11e-31 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso17g1837 SNF2_N 4e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1837 K11643 - gmx:100779829 2268.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1837 17 36830585 36854149 Gso4g0533 4 5111123 5132607 PCT
Gso17g1837 17 36830585 36854149 Gso6g0527 6 4846115 4863948 PCT
Gso4g0533 4 5111123 5132607 Gso17g1837 17 36830585 36854149 PCT
Gso6g0527 6 4846115 4863948 Gso17g1837 17 36830585 36854149 PCT