Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1835 ATGACCGTGGTGGAGAATCATACAATGGATGATCTCAGAGACCAGTTTCCTATTGGAATGCGTGTTCTTGCTGTTGATGATGACTCAACATGTCTCATGGTTTTGGAGACTCTGCTTCGAAGGTGTCAATACCATGTAACCACTACTAAAAATGCAATAACGGCATTGAATTTGTTGAGAGAAAACAAAACCATGTTTGACCTGGTAATCAGTGATGTCCACATGCCAGACATGGATGGATTTAAGCTGCTGGAGCTTGTGGGGCTTGAGATGGACCTACCTGTCATAATGTTGTCTGTAAATGATGACCCTAAGATGGTGATGAAGGGAATTACACATGGAGCTTGTGATTATCTTCTGAAACCTGTTAGAATTGAGGAGCTACAGAACATTTGGCAGCATGTAATCAGGAGGAAAAAGATTGATTCAAAGGAGCAGAACAAAACCAGCGACTATGACAAAACTAATTCTGATAGTGGCAATGGAAGAGGGTCAGCAGCGACAGGAAATTCTGATCAAAATGGAAAGCCTTCAAAAAAGAGGAAGGATCAGGATGAAGATGATGATGAAGAGAATGATACTGACCATGACAATGAGGACCCATCAACTCAGAAGAAGCCTCGAGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTTCTGCTGTCAATCTATTAGGCATTGACAAGGCTGTACCTAAAAAGATTCTTGACTTGATGAATGATGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTCCAGAAATATAGACTTTATCTGAAAAGAATTAGCTGTGGGGCAAACCGACAGGCTAATATGGTGGCAGCCTTAGGTACTGCAGATTCATCTTATTTGAGAATGGGTTCTCTGAGTGGCGTTGGACATTTGCAGACATTGACTGGTCCACAACAGTTTCATAACAATGCTTTCAGACCCTTTCCACCTGGTGGAATGATTGGTAGATTGAACACTTCTGTTGGTCTGAATAATCACGGGTTGTCTTCTTCAGAAGCTCTTCAGTTGAGTCATGCACAAAATTTAAACAACTCCATAAATGATCCACTTAAGTTCCAATCAGCCATAGCTTGTGGTAATCAAAATGCTATCCAGGGAATGCCAATGTCTATAGGCCTTGATCAATTGCAACATAATAAGGGTGTTAGTGTTAGTGTTGGTCCTATTCAAAACATGTCCCCTCTTATTGATGCTAGACCAACTTTTGCTGTGTCAAATAGACTCTCAGATCAAATACCAAAAGTAACAATGGGTTGCTCACCCTCTCCGGTCTTGGACATCTCAAACAATGCCTTGGTATTGAAAGCAGATAGTGAAAACACACAAGGGAGAGGAGTATATGAGAATTTAACTTCAGTAGCATCTCAGCATTCACAATTTTCGCTTCCTTTGCTGGATCATGGTAGGTGTAGTGATATTTGGTCAAGTCCTATGCGGTCATCTGGGACAAATTCTTACCCTCCAAGTGAAACTTTGCAAGGGGGGAATCTGAGTGGTGCTTCATCAATTACTTCACTGTCTAATCGATCCCATGATTCACAGACGGATATGCACTCTCAAGGACTCATTTTTACAAATAATTCAGGACAAATTAGCAATAATGTGCCATTTCTAGGGTGGGATGACCATAATCATGATAGTAGTTACCATTCAAATGTTATTGGTAACTCAATAGACTCTCTGATTGATCCTGAAGGTCATACTTCTATTAACTCAACCTACAACAGAAACTTGGACTTCAATTTCTGTGATCCCTTACAAATGAAGCATGATGGAATTATGGGATTGAGTGACGAAAACTCATTGAAACAACAACACAGGTACATCATGAACCAGCAGAAGTCTCAAAACAGTCGCGCCCCTAATAATATTGGTTCATTGGAAGACTTTGTCAGTTCGATGATGAAACAGAAACAAGACAAGGTGAAATTCTTGGACGGATCATATTTATGCAACAATAATTACCCTGACGGAACATCCATGTGA 2004 0.4082 MTVVENHTMDDLRDQFPIGMRVLAVDDDSTCLMVLETLLRRCQYHVTTTKNAITALNLLRENKTMFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNDDPKMVMKGITHGACDYLLKPVRIEELQNIWQHVIRRKKIDSKEQNKTSDYDKTNSDSGNGRGSAATGNSDQNGKPSKKRKDQDEDDDEENDTDHDNEDPSTQKKPRVVWSVELHRKFVSAVNLLGIDKAVPKKILDLMNDEKLTRENVASHLQKYRLYLKRISCGANRQANMVAALGTADSSYLRMGSLSGVGHLQTLTGPQQFHNNAFRPFPPGGMIGRLNTSVGLNNHGLSSSEALQLSHAQNLNNSINDPLKFQSAIACGNQNAIQGMPMSIGLDQLQHNKGVSVSVGPIQNMSPLIDARPTFAVSNRLSDQIPKVTMGCSPSPVLDISNNALVLKADSENTQGRGVYENLTSVASQHSQFSLPLLDHGRCSDIWSSPMRSSGTNSYPPSETLQGGNLSGASSITSLSNRSHDSQTDMHSQGLIFTNNSGQISNNVPFLGWDDHNHDSSYHSNVIGNSIDSLIDPEGHTSINSTYNRNLDFNFCDPLQMKHDGIMGLSDENSLKQQHRYIMNQQKSQNSRAPNNIGSLEDFVSSMMKQKQDKVKFLDGSYLCNNNYPDGTSM* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1835 667 Gene3D - 20 184 - -
Gso17g1835 667 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Gso17g1835 667 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 650 IPR045279 GO:0009736
Gso17g1835 667 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Gso17g1835 667 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Gso17g1835 667 Gene3D - 202 265 - -
Gso17g1835 667 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Gso17g1835 667 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Gso17g1835 667 MobiDBLite consensus disorder prediction 483 523 - -
Gso17g1835 667 Pfam Response regulator receiver domain 22 130 IPR001789 GO:0000160
Gso17g1835 667 CDD REC_typeB_ARR-like 22 136 - -
Gso17g1835 667 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 650 - -
Gso17g1835 667 SUPERFAMILY CheY-like 19 144 IPR011006 -
Gso17g1835 667 MobiDBLite consensus disorder prediction 153 174 - -
Gso17g1835 667 MobiDBLite consensus disorder prediction 143 207 - -
Gso17g1835 667 PIRSF RR_ARR_type-B 1 666 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso17g1835 667 SMART REC_2 20 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1835 Gso-Chr17 36770504 36776719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1835 1 647 Response Regulator Gene Family AT2G25180 41.955 8.38e-130 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso17g1835 Response_reg 5.8e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1835 - K14491 gmx:100777171 1323.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0962 14 12817767 12823700 Gso17g1835 17 36770504 36776719 GST
Gso17g1835 17 36770504 36776719 Gso4g0534 4 5134408 5138898 PCT
Gso17g1835 17 36770504 36776719 Gso6g0528 6 4866363 4871382 PCT
Gso4g0534 4 5134408 5138898 Gso17g1835 17 36770504 36776719 PCT
Gso6g0528 6 4866363 4871382 Gso17g1835 17 36770504 36776719 PCT