Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1832 ATGGAAGGACTAAGCATGAAGGAGCCATGCTTTTGTGACAGACCGACAAGTTCAAGCATCTTCTCTTCTTCTGCTCCTCCACCAGAGGCTCCCCCAAGTCCAAGTACCCCACTTCAGCATCCACATGAAAAGAAGAAACAGCTATGTGTTGAGGAATTAGAAGAGGAATTAGAAAATAAGGAGCCAAAAAAGCAGCATGTTAGTGTTACCCTTTTGGATCTGAATATTATCTCAGGTGGTGAAGATGAATCATGCACTCTAGAAGAAGGACCAGAACTCAACCTTATCACTTGTTTGGATGCGGGGTCATCATCCGATAATGCAAATTCTTCATCAGAAACAACAACAACAACAACAACAAACCCTCTTGGTAATTCTGATGCTACTGAGCCTAGAGTGTTCTCTTGCAACTACTGCCACAGAAAGTTCTACAGTTCACAAGCACTAGGTGGCCACCAAAATGCACACAAGAGAGAGAGGTCAATTGCAAAGAGAGGACACAGGTTTGGATCTCAGATTATGGCCTTTGGCCTTCCCCTTTTGCATCATAACAACAACAACAACAACAACAATCGTTTTGCAAGCATGGCTTCTCTACCTCTTTATCATAGCAATAGAGGAACTCTTGGAATTCAGGCACACTCCTTGATCCAGAAGCCTTCTTCTTCTTCTCATCATCATCATGTGAATGGTTTTGGAGGCTCTTATGCACACCATCATGGTTGGTCAAGGCCAATCATTGATCAACAACCCGGAATAGCAAAGCTTGCTGTGCCAGATTTTCATCACAGAACAAAATCAGCATTATCAGCATCACAAAGCAGTGTTGGTAGGTTTGAAATAATAGTTAATAGTAGTAATACCATGTTGAATTCTGCAGCCAGTAATAAAGAAATCGGTGGATGTGTGGCTAGTGGTGGAACTTGTTTGAAGACTACTACTAATCAAGAAGAAATGAAGCACCTTGATTTGTCCCTCAAGCTCTGA 987 0.4215 MEGLSMKEPCFCDRPTSSSIFSSSAPPPEAPPSPSTPLQHPHEKKKQLCVEELEEELENKEPKKQHVSVTLLDLNIISGGEDESCTLEEGPELNLITCLDAGSSSDNANSSSETTTTTTTNPLGNSDATEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGSQIMAFGLPLLHHNNNNNNNNRFASMASLPLYHSNRGTLGIQAHSLIQKPSSSSHHHHVNGFGGSYAHHHGWSRPIIDQQPGIAKLAVPDFHHRTKSALSASQSSVGRFEIIVNSSNTMLNSAASNKEIGGCVASGGTCLKTTTNQEEMKHLDLSLKL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1832 328 Gene3D Classic Zinc Finger 108 175 - -
Gso17g1832 328 MobiDBLite consensus disorder prediction 1 47 - -
Gso17g1832 328 SUPERFAMILY beta-beta-alpha zinc fingers 130 161 IPR036236 -
Gso17g1832 328 MobiDBLite consensus disorder prediction 103 127 - -
Gso17g1832 328 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Gso17g1832 328 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 328 - -
Gso17g1832 328 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 328 IPR044246 GO:0009788
Gso17g1832 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1832 Gso-Chr17 36693955 36695603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1832 33 328 C2H2 Transcription Factor Family AT5G10970 36.275 2.51e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso17g1832 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1832 - - gmx:100820461 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0963 14 12943017 12944520 Gso17g1832 17 36693955 36695603 GST
Gso17g1832 17 36693955 36695603 Gso4g0535 4 5151384 5152501 PCT
Gso17g1832 17 36693955 36695603 Gso6g0529 6 4888739 4889927 PCT
Gso4g0535 4 5151384 5152501 Gso17g1832 17 36693955 36695603 PCT
Gso6g0529 6 4888739 4889927 Gso17g1832 17 36693955 36695603 PCT