Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1826 ATGAAAACGAAGCTTCTTCTTCTTATGCTTCTCATGCTCCTCCTTATTCTCCACAAACCAACTTGGTTTCTTGCCTCTGCATACCCTCTTGCTCCCTCTCCTCAAGTTCCTCCCTTTTCTCCATTTCCCACTTCAATGTCTGCTTCCTCTCCAGGAATTGTGATGGGGGCTGAACAGCAACACATGGATTCGCACAAGAAAATGGTAATTGCTGTTGCTGTTGCCAGCACTTCACTTGGTGCAGTCATTTTGTGTGTGTTGTGCATCTGGATTTACTACACCAAATACCCTTCAAAATCCAAAGGGAAAAACGTTCAAAGATCAGATGCTGAGAAAGGGCTAGCTTCATCACCATTTTTGAGTAAATTCAGCTCTATAAAGCTGGTTGGTAAGAAAGGGTGTGTTCCAATAATTGACTATAAGCAAATAGAAAAAGCCACCGGAAATTTCAAGGAAATTAACATCTTGGGCAAGGGAGGTTTTGGATGCGTTTACAAGGCTCATTTGGATGATAATTTGGATGTTGCGGTTAAAAAATTGCACTGTGAAAATCAGTATGCTGAGCAAGAATTTGAGAACGAGGTGGATTTGTTAAGTAAAATTCAACATCCAAATGTGATTTCTCTGCTGGGTTGTAGCAGTAATGAGGATACAAGGATTATTGTCTATGAGTTGATGCATAATGGATCATTGGAAACTCAATTACATGGACCTTCTCATGGCTCAGCATTGACTTGGCATTTGAGGATCAAAATTGCTCTTGACACAGCAAGGGGATTAAAATATCTACATGAGCACTGTTACCCTCCGGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATACAAAGTTCAATGCCAAGCTTTCTGATTTTGGTCTTGCCATAACCAATGGGTCCCAGAACAAGAACAACCTCAAGCTTTCAGGAACGTTGGGTTACGTTGCCCCGGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTATATGCTTTTGGAGTTGTGCTTCTGGAGCTTCTATTGGGAAAGAAGCCTGTGGAAAAACTAGCACAAGCTCAATGCCAATCTATTGTCACATTGGCCATGCCACAGCTCACAGACAGATCTAAGCTTCCAAACATTGTGGATCCTGTAATTAAGAATACAATGGACCCCAAGCACTTATACCAGGTTGCTGCTGTGGCTGTGCTATGTGTGCAACCAGAGCCAAGTTACCGTCCACTGATTGCAGATGTTCTTCACTCACTGATCCCTCTTGTGCCAGTAGAGCTTGGAGGAACACTCAAAGTTTCACAACTGCCAAAACAAGTCTTACCTGCTGACCCACCTGAGGATTCTAGTCAATGA 1359 0.4187 MKTKLLLLMLLMLLLILHKPTWFLASAYPLAPSPQVPPFSPFPTSMSASSPGIVMGAEQQHMDSHKKMVIAVAVASTSLGAVILCVLCIWIYYTKYPSKSKGKNVQRSDAEKGLASSPFLSKFSSIKLVGKKGCVPIIDYKQIEKATGNFKEINILGKGGFGCVYKAHLDDNLDVAVKKLHCENQYAEQEFENEVDLLSKIQHPNVISLLGCSSNEDTRIIVYELMHNGSLETQLHGPSHGSALTWHLRIKIALDTARGLKYLHEHCYPPVIHRDLKSSNILLDTKFNAKLSDFGLAITNGSQNKNNLKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGKKPVEKLAQAQCQSIVTLAMPQLTDRSKLPNIVDPVIKNTMDPKHLYQVAAVAVLCVQPEPSYRPLIADVLHSLIPLVPVELGGTLKVSQLPKQVLPADPPEDSSQ* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1826 452 SMART serkin_6 150 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1826 452 PANTHER BNAC02G46490D PROTEIN 16 436 - -
Gso17g1826 452 SUPERFAMILY Protein kinase-like (PK-like) 132 420 IPR011009 -
Gso17g1826 452 PANTHER OS01G0750732 PROTEIN 16 436 - -
Gso17g1826 452 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524
Gso17g1826 452 Gene3D Phosphorylase Kinase; domain 1 117 225 - -
Gso17g1826 452 CDD STKc_IRAK 156 423 - -
Gso17g1826 452 Pfam Protein kinase domain 150 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1826 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Gso17g1826 452 ProSiteProfiles Protein kinase domain profile. 150 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1826 452 Gene3D Transferase(Phosphotransferase) domain 1 226 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1826 Gso-Chr17 36522343 36527620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1826 27 363 Receptor kinase-like Gene Family AT1G80640 49.118 9.35e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Gso17g1826 Pkinase 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1826 - - gmx:100785380 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0970 14 13225491 13230359 Gso17g1826 17 36522343 36527620 GST
Gso17g1826 17 36522343 36527620 Gso4g0540 4 5212559 5216457 PCT
Gso17g1826 17 36522343 36527620 Gso6g0534 6 4941222 4956199 PCT
Gso4g0540 4 5212559 5216457 Gso17g1826 17 36522343 36527620 PCT
Gso6g0534 6 4941222 4956199 Gso17g1826 17 36522343 36527620 PCT