Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1822 ATGGCGTACCATAACCACCACAACCTTTCACAACAAGACCTTCCTCCACTCCACCATTTCCCGAACCAATCCATGTTACCAGACCAACAACTACTTCCGTCCTCACCCGAACCTAACTCCAAACCTCCCTCCGATCCACACCCTCTCCAAACCGCGCCGAATTGGCTCAACGACGCGCTCCTCCGCACTCACTACACCGACACCACTAACACCGCCACCGTCGCCACCAACAGCAACGTTAACGTTAAGGTTAACGGTTCTAATTTCCTGAAACTGAACCCCGGCGCCTCCGACGCGCAGTGGCTGGCGCGGCCGGCGCTCCACCGCCACCCCGGCGAGGTCATCGATGACGGCGCCGGGGAGTCCATGGTGGAGCACGCCGATTTGAAGGACGGCGGCGGAGACGCCGTGAGCTGGCAGATTGGGCGGTGTAAGACGGAGATTCTGCAGCACCCGCTGTACGAGCAGCTGCTGTCGGCGCACGTGGCGTGCCTCCGGATCGCCACGCCGGTGGACCAGCTGCCGAGGATCGACGCGCAGCTGGCGCAGTCGCAGAATGTGGTCGCGAAATACGCAGCGTTCGGACACAACAACATCGTCGCCGATGACAAAGAACTCGACCAGTTCATGTCGCACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAATTGCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGTTAGAGCAATCATTGCAGAGTCTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAGAATGACCAAGTAGATAGTGATGCCAATCTCTTCGATTGTAGTTTTGATGGGGCAGATAGCATGGGGTTTGGTCCTCTTGTTCCTACAGAGAGCGAGAGGTCCCTCATGGAGCGAGTAAGACAAGAATTAAAGCATGAACTGAAACAGGGTTATAAGGAGAAAATTGTTGACATAAGAGAGGAAATTTTGCGCAAGAGAAGAGCAGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCGAAGAGGATAAGGCAAGGTTGGTGCAAGAAACTGGGTTGCAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGCAATGCAGGTGATAACTGA 1233 0.5255 MAYHNHHNLSQQDLPPLHHFPNQSMLPDQQLLPSSPEPNSKPPSDPHPLQTAPNWLNDALLRTHYTDTTNTATVATNSNVNVKVNGSNFLKLNPGASDAQWLARPALHRHPGEVIDDGAGESMVEHADLKDGGGDAVSWQIGRCKTEILQHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYAAFGHNNIVADDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDENDQVDSDANLFDCSFDGADSMGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTALKSKRKSNAGDN* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1822 410 Pfam KNOX1 domain 145 185 IPR005540 GO:0003677|GO:0005634
Gso17g1822 410 MobiDBLite consensus disorder prediction 385 403 - -
Gso17g1822 410 MobiDBLite consensus disorder prediction 1 35 - -
Gso17g1822 410 Pfam Homeobox KN domain 348 387 IPR008422 GO:0003677|GO:0006355
Gso17g1822 410 Pfam ELK domain 308 329 IPR005539 GO:0003677
Gso17g1822 410 MobiDBLite consensus disorder prediction 385 410 - -
Gso17g1822 410 SMART KNOX1_2 142 186 IPR005540 GO:0003677|GO:0005634
Gso17g1822 410 Gene3D - 329 390 - -
Gso17g1822 410 SUPERFAMILY Homeodomain-like 330 394 IPR009057 -
Gso17g1822 410 SMART HOX_1 330 395 IPR001356 GO:0003677
Gso17g1822 410 ProSiteProfiles ELK domain profile. 308 328 IPR005539 GO:0003677
Gso17g1822 410 CDD homeodomain 331 392 IPR001356 GO:0003677
Gso17g1822 410 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 405 - -
Gso17g1822 410 SMART ELK_2 308 329 IPR005539 GO:0003677
Gso17g1822 410 MobiDBLite consensus disorder prediction 1 53 - -
Gso17g1822 410 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 40 405 - -
Gso17g1822 410 SMART KNOX2_2 196 251 IPR005541 GO:0003677|GO:0005634
Gso17g1822 410 Pfam KNOX2 domain 201 250 IPR005541 GO:0003677|GO:0005634
Gso17g1822 410 ProSiteProfiles 'Homeobox' domain profile. 328 391 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1822 Gso-Chr17 36406166 36411468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1822 53 404 Homeobox Transcription Factor Family AT5G25220 69.841 3.21e-179 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso17g1822 KNOX2 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1822 - - gmx:100784317 788.875