Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1820 ATGGAGAGCGCGTGGAAGAGGAAATGTGATTCGCCGTTTCAGCCGTCCACGTCCGCGGCGGTTCCGTCTGCACCGGTGCCGGAGCCGGAGCCGGAGATAAACACAAGCCATTGTCTTTATCCACAATTTCCTCATGGCTTAAGATCAAAATTTGTTGGAGGGAAGCAATGCCCTGTTTACCAAAGCTTTCCCCACTCAATTACCCATGGATCAGGCCAAGCCGACACTGGAAGTTCATTTCTGTCTCTCCTTTATGCTCCTCCATCCTTGTTACAGCATGAGTCTTGGGATTTGTCTAATCACAAGCTTTGCATCTCATCTTGTGATTGTACTGCTGCTATTGGGAATTCTGTTGTTGGTTCCATAGAAAGTGGAACCTTCCGAACATCTGGTGTGGGGTTGATGACAGAAAATTTAATAAACCGTAACCTGCAAAGTTGGGTGACTACTTTTCCTGAGATTTCTTCCAGGGCAATGGTTGGTCTGAAGAATAGTAGTAATTTTGTCTTCCATGATATTCAGAGTAGCAATACTGCTACTCAGCCCACAATTCCTGGTGGTGAGAAAGCTAGGGAGTCTTTTTCTTCTTCAGGTCAGTGCCAAGGTACAAGCCCTGCATGTAGTCTAAATGTTTGCTGGTCAGATGTTCAAACTACACCAACTGTTGCTTTAGAACAAAGCTCATCTAAGTATGCAACACCTTTTATGAGTGGGTGCCCTCGTGTGTTCTGCATGGGAAAAAGTGGCCATCTTCTTCTTAGCAATACAGGGCTTCTTGGTATTGTTTGCTCATGCCATTGTTGCCACATGTCTGTTGTTAAGTTTTGCGAGCATTCAGGGTTATATGGTGTAGACCCAGGGGAAGCTGTTCGTATGGAAAGTGGGGAGACCATTTCTCAGTGGCAGAAGCAATACTTCTTGAAGTTTGGGATTAGGTCTCTGGGAAATGAGAATGAATGGGACTGGCCAGAAGTATTATCAACAACAGGAAGTCTGATGAGATCCAATGCATCTGCATTTGATATGTCCAAGACTAATTTGTCTCATATGTTGAGTTCATCTGCAGTCATGTCAAGGTCTGCAAAGTCTTCTGACTATGCCGTGTTTCCAAAAAACGCTCATGCAGACAACAATTTATTTATTGATGCATTGTCCAGTAAACAAGCGACAACAATCCAGGATGGTTGCAACATTCCACTCAAAGGTTTTACTGGTATTTCACAAAACAGCTTGTATGATCAGTTGAAAAACCAGCTAACGGTATCTAATCTGGCTATGTATACAACTGCACCAAACTTTGTTGGAACTCAATTGGATGATGGTTGTCAGCCAATACCTCCTTTCTTTGATTCTCAAAAAAGGAAAGGAAATTTGTCTAGTGCCCACTCTCCTTTGCAAATTCCAACAAGCCTTTTGAAAGACCATGATTGCATCAAAAAGAAGAATGCTAATGATGGTCTTGTAGGCAAAGATGCAGCTTCTTCCAATATTGATCTTAGGCTTGGTCAACCACCTCAGACAGGAAATCTACTTCCATCATTTGCAGAACCACTGCTGTTTAATGCCCTTGCCAGTCCTCCAAAATCACAACCTCTGAAGCAGATGATTAATAATGCAGACCTCAGCAGGGAGGAGGAATTACAGAATAATTTTAGCTATGCTGCTGGTTCAATCAAAATGGTTCAAGAAATGCCTCAGCTTAAACTCAATAACTATATGTCTGCTGTGGGTAATGCTTCTGCTAGAGCTAGATCAGAAACTAAAAATGTGGCCGAGGGTTTATCATTTTCACCATTTCTGCAATTTGATAATCAATCTGGGGGAAAGACAAAAGCTAGTGAAAATTTGTGGAATGATGAAAGCTCTATCATGCCCAAGAAACTGTATTCTGATTACGGCCACACTGGAAGGCAATCAAACAATTCTGGCATAAGGACCAATAAAAGTTTGAACAATGATAAAGGGGTGAACTTTGCTAAAGACTCTGGTGTTAAAATAAATTCTGGTTTTGGTATTGGTCAGTTAATGGAATATCCAAGCTCCATCAAGAGAGCTGTTAGTGCTAGTGATATTTTGGTTGTTAACGGAAAGATACATGAATCAAGCTTACCATCAGATACATCTGTGTGTGCAGATATTTTGCATGGTTCAAACAATGTATCTTTTCTTGGGCAAGAAAATCATACTCCACAAACATCCATTCCATTTAAAGGGATTTTGAAAGGCCTTCCCCATCATGTTTCAAGTTCTGTGTCAAATCAGACTCCTATTTTGCCACAGCAGCAGCAGGGCATTAATATGGATGCTTATTTGCTTGATGAAAACATGAGGTTGCTTGCATTGTCACAGATACTGGAGTTATCTAAGCAACAGCATGCATTGTATCTTAAATATATCAATCAGAAGCAAGGGAGATCCAGCTGTATTTCAAAAGTTCAGCATTATAGGTGTGAGGCTTCAACATCTGAACAGGGAACTTCTGGTGCAACGTTGAAATTGTCCCAAAATAGAGGAATTTGGGGGAATCACGAGAGTACTGTTGGTTTAGAGAAACTGGCTTCCCTCACAGGTATGAATGGATATTGCCATTTGTCTGGCCTGCCACCAATACCTTTACATTCTAAAGAAAAGGAATCACGATGTAATGAGTCTTATGACCTTCAAAATGAAGACACTTCTTTAAGCCTTGGTATAAACAAAGACAATACCAGATCAGGTGCATGTGAAAAATGTTCTGAGCAACCATCAAATATATGTTTGGGAGGCAAGTACTCTTGCGCTGCTCAGACAAACTGTTGCAGAAGCAATTTTTTCTCAGGAATTGAACCCCTTTGTTACAACTTAAAGCAAAAACTTGGTAATGCCAGTGGTGAAACTTCTTTGAAGATGGCTTCAGATTTGAGTAGAGATGTGGATACATCAAAGGGAAAAAATATCCTCATTGAGCAGGGTGGGAAGTTAGATGGCCAAGACTCAATCAAAATTGGCTTTCATACACCTCAATGGAGAGATGTGCCAAGTAAGGTCAGGAAAGCAGTTTGTGATGCAACATCTTTAGATCAGACAGCTACTGGTTTGGATTGGGAAGGACAAGATGGTGTTCAACTTGGAAACATTTCTATGAAACGCTTCAAAAGAACTATTGGCATGGGAGACATCTCAAAAGAGCAAAAAAGTTCTAATGTTTCTTCTGGATGCTCTGCTCCTGTGGTTACTCAGGCATCTGTGGAGGTCAACAAAATTGATTCCTGTACTGATGATGCTGTAGACACTGGCTTTGTCAACAACCTTGTAGTTGATGAAGGGTCAGGTATTGATCAAGGCTGGTCGTCAGATTTGGTTGAAAGAAGTGATGAGTTTCTAGGCTCGACCACTGGGAGTTGCTTGAAAAATGATTATCTGAGAGTCTTATATGATCAACCATGTTGCAATCTCCTTGATGACCTTAAACTGTTGGATTCCTTGATATGGAAGAAAGGACGGAATCAAAATCATTTTGTGCTTTCTTCTAATTGTAAAACCAATCAATCTCAAAAAGTCAAGAAAGTCCTTAAAGGAAAAAAGCGAAAGAGAAATGTGGTGAGGATTGTAGATGCTTCATCTTCCTTATTGCATAAAAAGAATGAAGAAGGTGCTGGGATTTGTAATTCCTCTTCTAGTTTGTCAAGAGAAATGCAAATGCACTCTTTGTCTAGCCTGAAAAAATCATCTAACAAGTCTTCCTTCGTTCAACCTAGTAACAAACAAAAACATACTGCATATTCATCCAAATTTCTTTCTTGTAAGAATCGTCTGAACAAGCATCAAAGTTTCAAAGTTGGCTATGAGTCAGAATCAAGCTCTGATGCTGAGTTTCACACATTGCCTGGAGTTTCAGGAACAAAGAAATTGGAAAAGGATCTCAGTTCTGATTGTTTTGAACAGTTTCAAATGCAAGAACTAGCCTATGAGGAACCTGAAAATGATAAACTGAGGCCATTCTCTTGCAGGAAGGAAAATGCTCATAGAATCACAAGGCCAGTAGTAGTATGTGGAAAATATGGTGAAATATCTAATGGGCATTTGGCTAGAGAGGTGCAAAAACCAGCAAAAATTGTCTCTCTCAGCAAGGTTCTTAAATCTTCCAAAAGATGTATGGGCCATACAAATGGAAAACCCAGACTAACTTCAAAAAAGAAATGGAAGAGATTGAGCATTGAAACAAGTAGTGGGCACTGCTGTAGGAACCCTGGTTTGAAAATTAAGGAACACAATGAAACCGAGAATACAATATTTTTAAATGAAACAAATGTTGATGTGTCCATGGAAGATTTGGAGAGAGGTGGCAAGCCACCTGCTGTATATAAAGGGAAGAGAGATGCCAAAGCTAAGCAGGGTGATAGTGTTGGAAATAGAGCTAATATTTCATTGAAGGTGAAGAACAAGGAAATTCGGAAACAGCGTAGTATTAATGAACTCACTGCTAAAGAAACCAAAGTGATGGATATGACGAAATGTGCTCAAGATCAGGAGCCTGGTTTGTGTGGCACAAAAAGTAGAAACTCTATTCAAGGTCACACGAGCATATCCACCATAAATTCAGATGCTTTCTGCTGTGTGTGTCGACGCTCAACCAATGATAAAATCAACTGTTTGTTGGAGTGTAGTCGATGTCTGATTAGAGTACATCAAGCTTGCTATGGTGTTTCCACATTACCCAAAAAAAGTAGTTGGTGTTGCAGGCCATGCCGAACAAACTCAAAAAATATTGTATATCCCGCTTGTGTCCTTTGTGGTTATGGAGGTGGAGCCATGACTCGAGCAATAATGAGTCACACGATTGTCAAGAGCCTCCTCAAAGTGTGGAATTGTGAGAAAGATGGCATGCCTAGGGATACAACTTCATGTGAAGTTCTTGAAAAGGAAATAGATGCATTTCCATCCTCAAAAGATGGACTAGAAGTTGATCAAGAAAGTGTTTTGAAGCCGAAAATCGTTGATACATCAACAGATCTGATGAATCAAATATCTACAAATCACATACCACACACCCCAACCTCTTTTTCAAATTTCAAGGTACATAACAGCATTACAGAAGGGGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTAGAACAAGATGCCCTAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTTCACGTCCAAGAGCAGATGTGGTTTGTTCCATTTGCAATCGATGGGGTGGTTCTTGTATAGAGTGCAGGATTGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTCTTGCAAAGTGAGACTGAAGGTATTAATGATGAGAAGATTGGATTTTATGGAAGATGCATGCTTCATACTATTGAACCTAGATGTCTGTTCATATATGATCCTCTTGATGAAATTGGCAGTCAAGAACAAAAGGAATTCACCTGTGCGAGGGTAGAGGGTTACAAGGGCCGTAGGTGGGATGGTTTTCAGAATAATCAGTGCCAAGGTGGATGCCTTGTTCCTGAGGAGCAGCTAAATGCTTGGATACACATTAATGGGCAGAAATTATGTTCGCAGGGACTTCCAAAATTCCCAGATTTAGATATTGAGCATGATTGTCGAAAGGAATATGCTCGGTACAAACAAGCAAAGGGATGGAAACACCTTGTTGTATACAAGTCCCGAATACATGCCCTTGGTCTTTACACTTCTCGATTTATTTCCCGGGGTGAAATGGTTGTTGAGTATATTGGTGAAATTGTGGGGCTGCGTGTGGCTGATAAAAGAGAAAAGGAATATCAATCTGGAAGGAAACTTCAGTACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAACATATTATTGACGCCACAAGGAAAGGGGGGATTGCTCGATTTGTTAACCACTCATGCCTGCCAAATTGCGTGGCAAAAGTGATCACCGTAAGGCATGAAAAGAAGGTCGTCTTCTTGGCAGAAAGGGACATATTTCCTGGTGAAGAGATTACGTATGATTATCACTTTAACCACGAAGACGAAGGAAAGATTCCATGTTACTGCTATTCAAAAAATTGCAGGCGCTATATGAACTGA 6108 0.406 MESAWKRKCDSPFQPSTSAAVPSAPVPEPEPEINTSHCLYPQFPHGLRSKFVGGKQCPVYQSFPHSITHGSGQADTGSSFLSLLYAPPSLLQHESWDLSNHKLCISSCDCTAAIGNSVVGSIESGTFRTSGVGLMTENLINRNLQSWVTTFPEISSRAMVGLKNSSNFVFHDIQSSNTATQPTIPGGEKARESFSSSGQCQGTSPACSLNVCWSDVQTTPTVALEQSSSKYATPFMSGCPRVFCMGKSGHLLLSNTGLLGIVCSCHCCHMSVVKFCEHSGLYGVDPGEAVRMESGETISQWQKQYFLKFGIRSLGNENEWDWPEVLSTTGSLMRSNASAFDMSKTNLSHMLSSSAVMSRSAKSSDYAVFPKNAHADNNLFIDALSSKQATTIQDGCNIPLKGFTGISQNSLYDQLKNQLTVSNLAMYTTAPNFVGTQLDDGCQPIPPFFDSQKRKGNLSSAHSPLQIPTSLLKDHDCIKKKNANDGLVGKDAASSNIDLRLGQPPQTGNLLPSFAEPLLFNALASPPKSQPLKQMINNADLSREEELQNNFSYAAGSIKMVQEMPQLKLNNYMSAVGNASARARSETKNVAEGLSFSPFLQFDNQSGGKTKASENLWNDESSIMPKKLYSDYGHTGRQSNNSGIRTNKSLNNDKGVNFAKDSGVKINSGFGIGQLMEYPSSIKRAVSASDILVVNGKIHESSLPSDTSVCADILHGSNNVSFLGQENHTPQTSIPFKGILKGLPHHVSSSVSNQTPILPQQQQGINMDAYLLDENMRLLALSQILELSKQQHALYLKYINQKQGRSSCISKVQHYRCEASTSEQGTSGATLKLSQNRGIWGNHESTVGLEKLASLTGMNGYCHLSGLPPIPLHSKEKESRCNESYDLQNEDTSLSLGINKDNTRSGACEKCSEQPSNICLGGKYSCAAQTNCCRSNFFSGIEPLCYNLKQKLGNASGETSLKMASDLSRDVDTSKGKNILIEQGGKLDGQDSIKIGFHTPQWRDVPSKVRKAVCDATSLDQTATGLDWEGQDGVQLGNISMKRFKRTIGMGDISKEQKSSNVSSGCSAPVVTQASVEVNKIDSCTDDAVDTGFVNNLVVDEGSGIDQGWSSDLVERSDEFLGSTTGSCLKNDYLRVLYDQPCCNLLDDLKLLDSLIWKKGRNQNHFVLSSNCKTNQSQKVKKVLKGKKRKRNVVRIVDASSSLLHKKNEEGAGICNSSSSLSREMQMHSLSSLKKSSNKSSFVQPSNKQKHTAYSSKFLSCKNRLNKHQSFKVGYESESSSDAEFHTLPGVSGTKKLEKDLSSDCFEQFQMQELAYEEPENDKLRPFSCRKENAHRITRPVVVCGKYGEISNGHLAREVQKPAKIVSLSKVLKSSKRCMGHTNGKPRLTSKKKWKRLSIETSSGHCCRNPGLKIKEHNETENTIFLNETNVDVSMEDLERGGKPPAVYKGKRDAKAKQGDSVGNRANISLKVKNKEIRKQRSINELTAKETKVMDMTKCAQDQEPGLCGTKSRNSIQGHTSISTINSDAFCCVCRRSTNDKINCLLECSRCLIRVHQACYGVSTLPKKSSWCCRPCRTNSKNIVYPACVLCGYGGGAMTRAIMSHTIVKSLLKVWNCEKDGMPRDTTSCEVLEKEIDAFPSSKDGLEVDQESVLKPKIVDTSTDLMNQISTNHIPHTPTSFSNFKVHNSITEGVLDPTVKQWIHMVCGLWTPRTRCPNVDTMSAFDVSGVSRPRADVVCSICNRWGGSCIECRIADCSVKFHPWCAHQKNLLQSETEGINDEKIGFYGRCMLHTIEPRCLFIYDPLDEIGSQEQKEFTCARVEGYKGRRWDGFQNNQCQGGCLVPEEQLNAWIHINGQKLCSQGLPKFPDLDIEHDCRKEYARYKQAKGWKHLVVYKSRIHALGLYTSRFISRGEMVVEYIGEIVGLRVADKREKEYQSGRKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFLAERDIFPGEEITYDYHFNHEDEGKIPCYCYSKNCRRYMN* 2036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1820 2035 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 30 2035 - -
Gso17g1820 2035 SMART set_7 1891 2018 IPR001214 GO:0005515
Gso17g1820 2035 ProSiteProfiles SET domain profile. 1891 2012 IPR001214 GO:0005515
Gso17g1820 2035 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 30 2035 - -
Gso17g1820 2035 SUPERFAMILY FYVE/PHD zinc finger 1525 1583 IPR011011 -
Gso17g1820 2035 Pfam SET domain 1904 2011 IPR001214 GO:0005515
Gso17g1820 2035 SMART PHD_3 1738 1794 IPR001965 -
Gso17g1820 2035 SMART PHD_3 1530 1577 IPR001965 -
Gso17g1820 2035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1516 1583 IPR013083 -
Gso17g1820 2035 MobiDBLite consensus disorder prediction 1 32 - -
Gso17g1820 2035 ProSiteProfiles Zinc finger PHD-type profile. 1528 1579 IPR019787 -
Gso17g1820 2035 ProSiteProfiles Extended PHD (ePHD) domain profile. 1680 1794 IPR034732 -
Gso17g1820 2035 Pfam Tify domain binding domain 258 305 IPR032308 -
Gso17g1820 2035 MobiDBLite consensus disorder prediction 1226 1249 - -
Gso17g1820 2035 CDD ePHD 1701 1784 - -
Gso17g1820 2035 Pfam PHD-zinc-finger like domain 1698 1774 - -
Gso17g1820 2035 Gene3D SET domain 1807 2035 IPR046341 -
Gso17g1820 2035 Pfam PHD-finger 1543 1577 - -
Gso17g1820 2035 ProSiteProfiles Post-SET domain profile. 2019 2035 IPR003616 -
Gso17g1820 2035 ProSitePatterns Zinc finger PHD-type signature. 1531 1576 IPR019786 -
Gso17g1820 2035 SUPERFAMILY SET domain 1855 2031 IPR046341 -
Gso17g1820 2035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1681 1794 IPR013083 -
Gso17g1820 2035 CDD SET_SETD1-like 1893 2031 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1820 Gso-Chr17 36311134 36343670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1820 1893 2031 C2H2 Transcription Factor Family AT2G23740 34.591 1.83e-16 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso17g1820 SET 2.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1820 - - gmx:100816713 4054.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0978 14 13558049 13579015 Gso17g1820 17 36311134 36343670 GST