Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1819 ATGACAGAGCCTCCTAGTGTGCTGCCCCTCCAAATAATGTTAATCCTTCTCCTTATCAAAAGTGGCAGCAGCAACAATGAGTGTGGGGAATGGTCTTGCGGCTCTGGCCAACCACCTATCAGATTTCCCTTCAAACTCATCAAGGGAATTAAAGATGAATGTGGTTATCCGGGGTTTTGTCTATATTGTACTAAAAAAAATGAGACTATGCTTGCTCTCTCCTCCGTAAAACTCCAAGTCAGTTACATAAACTACGAAAATCATGAAATTGGGTTGAAAGACCCGGAAAATTGCCTTCCGCACAAGTTTCTGCAAATCAACGATTCTCTTATTCATCCTTACAAATTTGACGATGAAGCTAAAACAAGTAAGTTGAGCTTCTTCAACTGTTCTTCAGTTGAGCATCAACACCTGAGAAACTACGAGCAGTCACTGTCAGACTCACAAGACATGATCTCCTGTCCGATTTATGTTTCTGATCTTGATGACAGTGTGCTCAGTTTGGACCTAACATCCTGTACCAAAATGTTCGATATCGTTACGCCAGTTTCGGCATACGGGATGCAGCGAAATTCGTTGGATTTAAGATGGTCCGAAGCAAATTGTAGTCAGTGCAAAGCAAAAGGCAAGAAATGTAAATGGAAGAACAACAGAGGTGACATCGAATGTTTCGACTGCAAGGACAAGCGAAAAACTATTCATGTTCCCAAATCTTTTATTTACTCTGCACCAGGTTCGATTCTTTTGGGGTTCGCGGTTATTGTCGTTTTTAAGATCATATACCATTTTAGACAGAAACAAGAGGACCAAGCAAGGGTGGAGAAGTTCTTAGAGGAATACAGGGCAGAAAAGCCTGCAAGATTTACTTATGCTGATGTGAAAAGAATCACTGGTGGTTTTAAAGAGAAGCTAGGGGAAGGAGCTCATGGGGCTGTATTCAGAGGAAAACTTTCAAATGAGATTCTGGTGGCTGTGAAAATCCTCAATAATACAGAGGGAGAAGGGAAAGAGTTCATCAATGAAGTGGAAATTATGGGCAAAATCCACCACATCAATGTGGTTCGTTTGCTTGGCTATTGTGCTGAAGGAATCCATCGTGCTCTGGTCTACAATTTCTTTCCAAATGGTTCACTTCAAAGCTTCATATTTCCACCAGATGACAAGCAGAATTTCCTTGGCTGGGAGAAGCTGCAGAACATTGCTCTTGGTATAGCTAAAGGGATTGGGTATCTTCACCAAGGTTGTAACCATCCCATTATTCACTTTGACATCAATCCTCACAATGTGTTACTTGATGACAACTTCACTCCAAAAATTTCTGATTTTGGCTTAGCAAAATTGTGTTCCAAGAATCCTAGTTTGGTGTCCATGACAGCTGCTAGGGGAACCTTGGGATACATTGCACCTGAAGTTTTCTCCAGAAACTTTGGGAATGTGTCTTATAAATCTGATATTTATAGTTACGGAATGTTGTTGTTAGAAATGGTTGGAGGAAGGAAGAATGTAGACACGTCTTCTGCAGAAGATTTCCATGTGTTGTACCCAGATTGGATGCATGACCTAGTTCATGGAGATGTACATATCCATGTTGAGGATGAAGGTGATGTTAAAATTGCAAGAAAACTAGCAATTGTTGGACTTTGGTGCATTCAGTGGCAGCCATTGAACCGGCCATCCATAAAATCTGTCATACAAATGTTGGAAAGTAAAGAGGAAGACCTATTAACTGTTCCTCCTAATCCATTTCACTCATCTACTTCCACCATTCCTAGTGGATTCACTTCGGCAAGACTACCTTTGGAATTGGAAGTAATTCAAGAATGA 1824 0.409 MTEPPSVLPLQIMLILLLIKSGSSNNECGEWSCGSGQPPIRFPFKLIKGIKDECGYPGFCLYCTKKNETMLALSSVKLQVSYINYENHEIGLKDPENCLPHKFLQINDSLIHPYKFDDEAKTSKLSFFNCSSVEHQHLRNYEQSLSDSQDMISCPIYVSDLDDSVLSLDLTSCTKMFDIVTPVSAYGMQRNSLDLRWSEANCSQCKAKGKKCKWKNNRGDIECFDCKDKRKTIHVPKSFIYSAPGSILLGFAVIVVFKIIYHFRQKQEDQARVEKFLEEYRAEKPARFTYADVKRITGGFKEKLGEGAHGAVFRGKLSNEILVAVKILNNTEGEGKEFINEVEIMGKIHHINVVRLLGYCAEGIHRALVYNFFPNGSLQSFIFPPDDKQNFLGWEKLQNIALGIAKGIGYLHQGCNHPIIHFDINPHNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDTSSAEDFHVLYPDWMHDLVHGDVHIHVEDEGDVKIARKLAIVGLWCIQWQPLNRPSIKSVIQMLESKEEDLLTVPPNPFHSSTSTIPSGFTSARLPLELEVIQE* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1819 607 Pfam Protein tyrosine and serine/threonine kinase 300 567 IPR001245 GO:0004672|GO:0006468
Gso17g1819 607 Pfam Wall-associated receptor kinase galacturonan-binding 28 94 IPR025287 GO:0030247
Gso17g1819 607 ProSiteProfiles Protein kinase domain profile. 298 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1819 607 PANTHER RECEPTOR-LIKE KINASE 15 607 - -
Gso17g1819 607 SUPERFAMILY Protein kinase-like (PK-like) 282 569 IPR011009 -
Gso17g1819 607 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 607 IPR045874 GO:0004672
Gso17g1819 607 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Gso17g1819 607 Gene3D Transferase(Phosphotransferase) domain 1 373 577 - -
Gso17g1819 607 Gene3D Phosphorylase Kinase; domain 1 270 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1819 Gso-Chr17 36287661 36289764 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1819 31 590 Receptor kinase-like Gene Family AT5G38260 36.271 1.20e-102 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso17g1819 PK_Tyr_Ser-Thr 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1819 - - gmx:100811907 1224.15