Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1793 ATGACATATAATTGGGTGTTGTGGACGAAAACCATGGGAAGACAGTGGTCTCTCTTCAGTGCCATGGATACCCTCTTGTTGTGTATCCTTCTTTCTTCTGAAGTTGTTTTGACTAGTTATCAAAACGTTGGCAAAGTTTATCCGGGAATTGAAGGTTCTCAAATGAATTGGATTGACAGGTATGGAATTTTGCTTGAGTCATATAATGGAGAATTTGGCTTTGGTTTGGTCACCACTGCAAATGACTCCACATTGTTTCTACTAGCAATAGTCCACATGCACACCCCCAAGTTGGTTTGGGTTGCAAATAGGGAACTTCCTGTTTCCAATTCTGATAAATTTGTGTTTGATGAGAAGGGCAATGTCATTTTGCATAAAGGAGAAAGTGTGGTGTGGTCTACATATACAAGTGGCAAGGGTGTTTCTTCAATGGAATTGAAGGACACTGGAAACTTGGTTTTGCTAGGGAATGATAGTAGAGTGATTTGGCAAAGTTTCAGCCACCCTACAGATACCTTGTTGCCAATGCAAGATTTCATTGAGGGAATGAAACTTGTCAGTGAACCTGGTCCTAACAACTTGACCTATGTTCTTGAGATTGAATCTGGCAGTGTCATTCTCTCCACTGGTTTACAAACTCCACAGCCTTATTGGTCTATGAAGAAGGATAGCCGCAAAAAAATTGTCAACAAAAATGGTGATGTGGTGGCTTCAGCTACTCTTGATGCAAACTCCTGGAGGTTCTATGATGAGACTAAATCCTTGTTGTGGGAATTGGATTTTGCTGAAGAATCAGATGCAAATGCCACTTGGATTGCAGTTTTGGGAAGTGATGGCTTCATCACTTTCTCCAATCTTCTAAGTGGAGGGTCAATTGTTGCTTCACCAACAAGAATACCACAAGATTCTTGCAGCACTCCAGAACCTTGTGATCCCTATAACATATGCAGTGGTGAAAAAAAGTGCACCTGCCCTTCTGTTCTTAGCTCTAGGCCTAATTGCAAACCCGGGTTTGTCTCTCCTTGCAACTCAAAAAGCACCATTGAGCTTGTAAAAGCTGATGATAGACTCAATTACTTTGCACTTGGGTTTGTTCCACCCTCTTCAAAGACTGATTTGATTGGTTGCAAAACCTCTTGCAGTGCAAATTGCTCATGCCTTGCTATGTTCTTCAACAGCAGTTCAGGGAACTGTTTCCTGTTTGACAGGATTGGAAGCTTTGAGAAATCTGACAAAGATTCGGGTTTAGTGTCCTATATTAAGGTGGTATCTAGTGAAGGAGACACTAGAGACAGTGGAAGCAGCAAAATGCAGACAATAGTTGTTGTGATCATTGTCATAGTAACATTGTTTGTCATTTCTGGTATGCTATTCGTGGCACATAGATGCTTCAGGAAAAAGGAAGATTTGCTTGAGTCTCCTCAAGAGGATTCAGAAGATGACAGTTTCTTGGAGAGTTTAACTGGCATGCCAATCCGTTACAGCTACACTGATCTAGAAACTGCAACAAGTAACTTCTCTGTGAGGCTTGGAGAAGGGGGTTTCGGTTCAGTATATAAAGGAGTTCTACCAGATGGGACTCAACTAGCTGTGAAGAAGTTGGAAGGAATTGGCCAAGGGAAGAAAGAGTTCAGAGTTGAAGTAAGCATTATAGGGAGCATTCATCACCACCATTTGGTAAGGCTTAAAGGTTTCTGTGCTGAAGGGTCTCATAGAGTTCTTGCTTATGAGTACATGGCTAATGGTTCATTGGATAAATGGATATTCAACAAGAACAAAGAGGAATTTGTGTTGGATTGGGATACAAGGTATAACATAGCACTTGGAACAGCAAAAGGACTTGCTTATCTACATGAAGATTGTGACTCAAAGATTATTCATTGTGACATCAAACCAGAAAATGTGCTCCTAGATGATAATTTCAGGGTCAAGGTTTCTGATTTTGGTTTGGCTAAGCTCATGACACGTGAGCAAAGCCATGTTTTCACAACACTTAGAGGCACTAGAGGGTATCTTGCACCTGAGTGGATCACAAACTGTTCCATATCAGAGAAAAGTGATGTTTATAGCTATGGTATGGTGTTGCTGGAGATCATTGGGGGGAGGAAAAACTATGATCCCAGTGAAACTTCAGAGAAATCTCATTTCCCATCTTTTGCTTTTAAGATGGTGGAAGAAGGGAATGTGAGAGAGATTCTTGACTCAAAGGTGGAAACTTATGAAAATGATGAAAGGGTTCACATTGCTGTGAATGTTGCATTGTGGTGCATACAGGAAGACATGTCTCTTAGGCCTTCCATGACCAAAGTTGTTCAAATGTTAGAGGGTCTATGCACTGTTCATAAGCCACCAACTTGTTCTGTCCTAGGTTCTCGGTTTTATTCTACTAGTGAGGTTGGCACTTCTTCAGGGCCATCAGATTGTAACAGTGAAGCCAATCTTTCTGCTGTTAGGCTTTCAGGGCCAAGATAA 2472 0.413 MTYNWVLWTKTMGRQWSLFSAMDTLLLCILLSSEVVLTSYQNVGKVYPGIEGSQMNWIDRYGILLESYNGEFGFGLVTTANDSTLFLLAIVHMHTPKLVWVANRELPVSNSDKFVFDEKGNVILHKGESVVWSTYTSGKGVSSMELKDTGNLVLLGNDSRVIWQSFSHPTDTLLPMQDFIEGMKLVSEPGPNNLTYVLEIESGSVILSTGLQTPQPYWSMKKDSRKKIVNKNGDVVASATLDANSWRFYDETKSLLWELDFAEESDANATWIAVLGSDGFITFSNLLSGGSIVASPTRIPQDSCSTPEPCDPYNICSGEKKCTCPSVLSSRPNCKPGFVSPCNSKSTIELVKADDRLNYFALGFVPPSSKTDLIGCKTSCSANCSCLAMFFNSSSGNCFLFDRIGSFEKSDKDSGLVSYIKVVSSEGDTRDSGSSKMQTIVVVIIVIVTLFVISGMLFVAHRCFRKKEDLLESPQEDSEDDSFLESLTGMPIRYSYTDLETATSNFSVRLGEGGFGSVYKGVLPDGTQLAVKKLEGIGQGKKEFRVEVSIIGSIHHHHLVRLKGFCAEGSHRVLAYEYMANGSLDKWIFNKNKEEFVLDWDTRYNIALGTAKGLAYLHEDCDSKIIHCDIKPENVLLDDNFRVKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNCSISEKSDVYSYGMVLLEIIGGRKNYDPSETSEKSHFPSFAFKMVEEGNVREILDSKVETYENDERVHIAVNVALWCIQEDMSLRPSMTKVVQMLEGLCTVHKPPTCSVLGSRFYSTSEVGTSSGPSDCNSEANLSAVRLSGPR* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1793 823 SUPERFAMILY Protein kinase-like (PK-like) 482 775 IPR011009 -
Gso17g1793 823 SMART blect_4 56 169 IPR001480 -
Gso17g1793 823 ProSitePatterns Protein kinases ATP-binding region signature. 510 533 IPR017441 GO:0005524
Gso17g1793 823 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 12 823 - -
Gso17g1793 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 95 220 IPR036426 -
Gso17g1793 823 SMART serkin_6 504 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1793 823 MobiDBLite consensus disorder prediction 800 816 - -
Gso17g1793 823 ProSiteProfiles Protein kinase domain profile. 504 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1793 823 Gene3D - 61 168 IPR036426 -
Gso17g1793 823 CDD STKc_IRAK 510 777 - -
Gso17g1793 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Gso17g1793 823 PIRSF SRK 19 821 IPR024171 GO:0004674
Gso17g1793 823 Pfam D-mannose binding lectin 98 178 IPR001480 -
Gso17g1793 823 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 12 823 - -
Gso17g1793 823 CDD B_lectin 65 169 IPR001480 -
Gso17g1793 823 Pfam Protein kinase domain 508 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1793 823 MobiDBLite consensus disorder prediction 800 823 - -
Gso17g1793 823 Gene3D Phosphorylase Kinase; domain 1 471 578 - -
Gso17g1793 823 Gene3D Transferase(Phosphotransferase) domain 1 579 784 - -
Gso17g1793 823 ProSiteProfiles Bulb-type lectin domain profile. 50 167 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1793 Gso-Chr17 35139491 35142962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1793 431 784 Receptor kinase-like Gene Family AT5G20050 43.182 1.28e-95 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso17g1793 Pkinase 1.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1793 - - gmx:100787500 1664.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1005 14 14557441 14560868 Gso17g1793 17 35139491 35142962 GST
Gso17g1793 17 35139491 35142962 Gso4g0571 4 5536356 5539467 PCT
Gso17g1793 17 35139491 35142962 Gso6g0568 6 5270751 5274063 PCT
Gso4g0571 4 5536356 5539467 Gso17g1793 17 35139491 35142962 PCT
Gso6g0568 6 5270751 5274063 Gso17g1793 17 35139491 35142962 PCT