Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1763 ATGAAGATGTTTGGAATGTGTGGTGGTAGCGACGATGATAATCACAGAGATGATGAAGACAAAAGCCCGATTGGGGCAAGAGAAGATGGCAGCCAATACAGCCTCACAGGAGTTCTTCTTCCGTCTCTCGGGGCCACAGCTATTCGCAATGGCAGCGGTAGACCAAAGTTTCGCCAATACATTGTCTCACCATATAATCGTCATTACAAACTATGGAACACGTTTCTTCTGATATTGGTTTTCTACACTGCTTGGATGTGTCCATTTGAATTTGGTTTCCTTGAGAAATCAAATATTGCAGTGGCTATAACGGACAATGTTGTAAATGTGTTTTTTGCCATCGACATCGTGCTCACATTCTTCGTTGCCTACCTTGATAAGTCAACATATTTGCTAGTTGATGACCACAAACTCATTGCTTTGAGATATGCTAAATCCTGGTTGATCTTGGATGTCATTGCAACCATACCTTATGAAGTTGTTATTTTAATTTTGCCACCTTCTCTTCAGATATATAGTTACTTCAATTTTCTTCGCCTTTGGCGCCTCCATCGAGTGAGTGCCATGTTTGCAAGATTAGAAAAGGACAGGAACTATAACTACTTTTTGGTGCGTTGTTGCAAGCTTACATGTGTTACTTTATTCTCAGTGCATGCTGCTGCATGCTTTTTCTATTTTCTTGCTGCACGGGATAATCCAGAATCTACATGGCTTGGACTTGTTCCTGATGCCATTGACCAGAATCTATGGGGAAAGTATGTAGTAGCAATATATTGGTCCATAGTGACCCTTGTATCAGTTGGTTATGGTGATCTACATCCTGTAAATACAAAAGAAATGGTATTTGACATTTTTTATATGCTCTTTAATCTTGGACTCACCTCATATCTGATAGGCAACATGACCAATATGGTAGTCCACTGGACAGAAAGAACTAAGAGATATAGAGACACTGTCCAATCTGCCTCAAATTTTGCCCATAGGAACCACCTGCCAAATCGTTTGCAAGAACAAATATTTGCTCATTTGCTTATGAAGTACAGAACTGATTTAGAAGGACTACAACAGCAAGAGATCATTGATTCTCTTCCAAAAGCCATTCATTCTAGCATCTCACACTACCTATTCTTTTCACTTGTTGACAAAGTGTACTTGTTTCATGGAGTATCAAATGACCTACTTTTTCAACTGGTCACAGAGATGAAGGCTGAGTATTTTCCTCCGAAGGATGATGTGATTTTGCAAAATGAAGCACCAACAGACTTCTATATATTCGTTACAGGAGCTGCAGATCTTATCGTTCATAAGAATGGAATAGAGCAGGTTGTTGGCGAGGCAAAGTCTGGAGATGTAGTTGGGGAAATAGGAGTGTTATGCTATAGGCCACAATTGTTTACGGTTCGAACCAAGCGGTTGAGCCAGATCTTGCGTTTGAGTCGAACCTCATTTCTGAATCTTTCTCATTCAAATGTTGAAGATGGAACAATGATCATGAACAATTTTCTTCAAAATTTACATGAATCAGAGGATCCACTGATGAAAGAAATTTTGGCAGAAACAGAAGCAATGTTAGCCAGAGGAAAAATGGATTTGCCTATTAGTTTATTGTTTGCAGCTAGCAGAGGTGATGATATATTGTTGCATCAACTGCTAAAGAAGGGTTCAGATCCAAATGAACCAGATAAGGATGGAAAGACAGCATTGCATATTGCAGCTTCCAAAGGCAAAGACCATTGTGTAGCTTTGCTTCTAGAACATGGGGCTAATCCCAACATCAAAGACTTAGATGGAAATGTCCCGCTATGGGAAGCAATCAAGGGTGGGCATGATTCTGTGATGAAGCTTCTTATAGACAATGGTGCAGACATATCATCTGGCGATGTAGGTTCTCTTGCATGCATTTCTGTTGCGCAAAATAACTTAGAATTACTCAAGGATATTGTTCAATGTGGAGGAGACGTGACACGGTCCGCAAGCAACGGAAGCACAGCACTCCATGCTGCAGTGTGTGAAGGAAATGCTGAAATAGTGAAGTTCCTTCTAGAGCATGGAGCAGACATTGATAAGCAAGATGATAGTGGCTTGACTCCAAGGATTTTAGCAGATCAACAATGCCACGAAGAAATAATAAACATATTCAAGAAAGTTGGACAAAACAAAGCACCACATGGTATTCCTACAACGTCCTTTGTTGCAAGGTGTCAAAGTAAACCCACTATACTAGGCATTCATCAAGGAAGCAAGCCACCTAATGAAGAAGTGACATGGTTTGATAATCATCAAAGAAGAAAGATGAGCCCTTTCCACAATTCCTTTTTTGGGATAATGTCAACGGAAAATTATGATAAAAAAGATTCCACATCTTCATCTAAAACCAGTCACACTAGTAGGGAAGAATTACCAGCCAGAGTAACTCTTAGTTGTCCAGAGAAAGGTGAACATGGCAAAAAGCTTGTTTTTCTGCCAAAATCCCTTGAAGAATTACTACGTATTGGTGCTGAAAAGTTTGATTTCTCTCCCACCAAAATATTGAGCAAAGAAAGAGCTGAAATTGAAGACATATATGTTATAAGAGATGGTGATCTTCTTATTCTTGAATAG 2601 0.3964 MKMFGMCGGSDDDNHRDDEDKSPIGAREDGSQYSLTGVLLPSLGATAIRNGSGRPKFRQYIVSPYNRHYKLWNTFLLILVFYTAWMCPFEFGFLEKSNIAVAITDNVVNVFFAIDIVLTFFVAYLDKSTYLLVDDHKLIALRYAKSWLILDVIATIPYEVVILILPPSLQIYSYFNFLRLWRLHRVSAMFARLEKDRNYNYFLVRCCKLTCVTLFSVHAAACFFYFLAARDNPESTWLGLVPDAIDQNLWGKYVVAIYWSIVTLVSVGYGDLHPVNTKEMVFDIFYMLFNLGLTSYLIGNMTNMVVHWTERTKRYRDTVQSASNFAHRNHLPNRLQEQIFAHLLMKYRTDLEGLQQQEIIDSLPKAIHSSISHYLFFSLVDKVYLFHGVSNDLLFQLVTEMKAEYFPPKDDVILQNEAPTDFYIFVTGAADLIVHKNGIEQVVGEAKSGDVVGEIGVLCYRPQLFTVRTKRLSQILRLSRTSFLNLSHSNVEDGTMIMNNFLQNLHESEDPLMKEILAETEAMLARGKMDLPISLLFAASRGDDILLHQLLKKGSDPNEPDKDGKTALHIAASKGKDHCVALLLEHGANPNIKDLDGNVPLWEAIKGGHDSVMKLLIDNGADISSGDVGSLACISVAQNNLELLKDIVQCGGDVTRSASNGSTALHAAVCEGNAEIVKFLLEHGADIDKQDDSGLTPRILADQQCHEEIINIFKKVGQNKAPHGIPTTSFVARCQSKPTILGIHQGSKPPNEEVTWFDNHQRRKMSPFHNSFFGIMSTENYDKKDSTSSSKTSHTSREELPARVTLSCPEKGEHGKKLVFLPKSLEELLRIGAEKFDFSPTKILSKERAEIEDIYVIRDGDLLILE* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1763 866 SMART ANK_2a 530 559 IPR002110 GO:0005515
Gso17g1763 866 SMART ANK_2a 563 592 IPR002110 GO:0005515
Gso17g1763 866 SMART ANK_2a 596 625 IPR002110 GO:0005515
Gso17g1763 866 SMART ANK_2a 660 689 IPR002110 GO:0005515
Gso17g1763 866 SMART ANK_2a 627 656 IPR002110 GO:0005515
Gso17g1763 866 Pfam Cyclic nucleotide-binding domain 405 488 IPR000595 -
Gso17g1763 866 PANTHER POTASSIUM CHANNEL AKT1 4 866 IPR045319 GO:0005249|GO:0006813
Gso17g1763 866 MobiDBLite consensus disorder prediction 9 26 - -
Gso17g1763 866 ProSiteProfiles Ankyrin repeat profile. 596 628 IPR002110 GO:0005515
Gso17g1763 866 ProSiteProfiles cAMP/cGMP binding motif profile. 385 504 IPR000595 -
Gso17g1763 866 Pfam Ion transport protein 70 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso17g1763 866 PRINTS Ankyrin repeat signature 564 579 IPR002110 GO:0005515
Gso17g1763 866 PRINTS Ankyrin repeat signature 676 690 IPR002110 GO:0005515
Gso17g1763 866 SUPERFAMILY Ankyrin repeat 533 716 IPR036770 -
Gso17g1763 866 ProSiteProfiles Ankyrin repeat region circular profile. 596 627 - -
Gso17g1763 866 MobiDBLite consensus disorder prediction 782 801 - -
Gso17g1763 866 Gene3D - 72 306 - -
Gso17g1763 866 SMART cnmp_10 385 502 IPR000595 -
Gso17g1763 866 CDD CAP_ED 385 498 IPR000595 -
Gso17g1763 866 Gene3D Jelly Rolls 353 522 IPR014710 -
Gso17g1763 866 ProSiteProfiles KHA domain profile. 803 866 IPR021789 -
Gso17g1763 866 MobiDBLite consensus disorder prediction 784 798 - -
Gso17g1763 866 ProSiteProfiles Ankyrin repeat profile. 660 692 IPR002110 GO:0005515
Gso17g1763 866 Pfam KHA, dimerisation domain of potassium ion channel 803 865 IPR021789 -
Gso17g1763 866 ProSiteProfiles Ankyrin repeat region circular profile. 660 692 - -
Gso17g1763 866 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 4 866 - -
Gso17g1763 866 Pfam Ankyrin repeats (3 copies) 636 713 IPR002110 GO:0005515
Gso17g1763 866 Pfam Ankyrin repeats (3 copies) 535 625 IPR002110 GO:0005515
Gso17g1763 866 ProSiteProfiles Ankyrin repeat profile. 563 595 IPR002110 GO:0005515
Gso17g1763 866 ProSiteProfiles Ankyrin repeat region circular profile. 563 594 - -
Gso17g1763 866 PRINTS EAG/ELK/ERG potassium channel family signature 82 89 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso17g1763 866 PRINTS EAG/ELK/ERG potassium channel family signature 105 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso17g1763 866 PRINTS EAG/ELK/ERG potassium channel family signature 116 125 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso17g1763 866 PRINTS EAG/ELK/ERG potassium channel family signature 253 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso17g1763 866 PRINTS EAG/ELK/ERG potassium channel family signature 279 290 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso17g1763 866 PRINTS EAG/ELK/ERG potassium channel family signature 297 306 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso17g1763 866 Gene3D - 532 715 IPR036770 -
Gso17g1763 866 SUPERFAMILY Voltage-gated potassium channels 64 306 - -
Gso17g1763 866 SUPERFAMILY cAMP-binding domain-like 310 505 IPR018490 -
Gso17g1763 866 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1763 Gso-Chr17 34327212 34334891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1763 31 865 Ion Channels AT4G32500 58.796 0.0 980
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1763 K21867 - gmx:100809960 1732.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1030 14 16323930 16338380 Gso17g1763 17 34327212 34334891 GST
Gso17g1763 17 34327212 34334891 Gso4g0597 4 5754433 5760986 PCT
Gso17g1763 17 34327212 34334891 Gso6g0595 6 5493912 5499868 PCT
Gso4g0597 4 5754433 5760986 Gso17g1763 17 34327212 34334891 PCT
Gso6g0595 6 5493912 5499868 Gso17g1763 17 34327212 34334891 PCT