Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1755 ATGGTGGCACATTCGAGTTCTTGGGGAAGGGCACTCGTCGCGATCTCGCCCTACACCTTCTCCGCCATCGGCATCGCCGTCGCTATCGGCGTCTCCGTCCTCGGCGCCGCCTGGGGGATCTACATCACCGGAAGCAGCTTGATCGGCGCTGCAATCAGGGCTCCTCGAATCACTTCCAAAAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATTGTGGCTATTATTCTTCAAACCAAATTAGAAAGTGTTCCAGCATCAAATATTTATGCACCAGAGTCTCTTAGGGCTGGATATGCAATCTTTGCATCGGGATTAATTGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCCCAGAACTCCTCTCTCTTTGTGAAAATTCTTGTGATCGAGATCTTTGGTAGTGCGCTGGGGCTATTTGGAGTTATTGTTGGAATAATTATGTCAGCTCAAGCAACATGGCCAACGAAAGTTTAG 531 0.4727 MVAHSSSWGRALVAISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIRAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASNIYAPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKV* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1755 176 SUPERFAMILY F1F0 ATP synthase subunit C 99 167 IPR035921 -
Gso17g1755 176 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 174 - -
Gso17g1755 176 CDD ATP-synt_Vo_c_ATP6F_rpt2 102 166 - -
Gso17g1755 176 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 3 174 - -
Gso17g1755 176 Gene3D - 18 173 IPR035921 -
Gso17g1755 176 PRINTS Vacuolar ATP synthase 16kDa subunit signature 36 60 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso17g1755 176 PRINTS Vacuolar ATP synthase 16kDa subunit signature 62 86 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso17g1755 176 PRINTS Vacuolar ATP synthase 16kDa subunit signature 118 144 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso17g1755 176 PRINTS Vacuolar ATP synthase 16kDa subunit signature 145 168 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso17g1755 176 SUPERFAMILY F1F0 ATP synthase subunit C 16 85 IPR035921 -
Gso17g1755 176 Pfam ATP synthase subunit C 107 166 IPR002379 GO:0015078|GO:0033177|GO:1902600
Gso17g1755 176 Pfam ATP synthase subunit C 23 82 IPR002379 GO:0015078|GO:0033177|GO:1902600
Gso17g1755 176 CDD ATP-synt_Vo_c_ATP6F_rpt1 20 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1755 Gso-Chr17 34136251 34139061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1755 4 175 Primary Pumps ATPases(2) AT2G25610 92.442 2.86e-109 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1755 K03661 - gmx:100778175 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1036 14 16546705 16549615 Gso17g1755 17 34136251 34139061 GST