Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1744 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCACGATTACTTAGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGCAAAGTGTCCTCGGACCCTGTTGCTATTGATGCACCTGGAGGATTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCTAGGACAAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACCCAGTTAATTAAGGCGAGAGAGCAACAGCAGCAGCAACAGCAACAGCAACAGCAACAGCAACAAGGGCAGCAGCAGCCACAACCTCAGAAGTTGCAACATCAACAACAGCAGCAGCAACAACAACACATGCAGATGCAACAAATCCTATTACAAAGGGCTCAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAACCACAACAACAGCAGCAGCAGCAGCAACCACAACAGCAGCATCAGCAGCAGCAGCAACCACAACAGCAGGGTAGGGATAGGGCTCATCTCTTAAATGGTGGTACGAATGGGTTAGTTGGAAACCCTAGCACAGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGGTTAAAATTGCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGACCAAATCTTAGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACCGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGATCTACTCCGGATATAAAGAGTGAGATCAATCCTGTTTTAAATCCCAGAGCTGCCGGCCCTGAAGGATCATTGATAGCAATGCCTGGTTCGAATCAAGGTAGCAACAATTTGACTCTGAAAGGATGGCCACTCACAGGCTTGGAGCAACTACGTTCTGGTCTACTCCAGCAACAGAAACCTCCTTTCATACAGTCTCCTCAGCAATTTCATCAACTTCCAATGTTGACACCACAACATCAGCAACAGTTAATGCTAGCACAACAAAATTTGGCATCTCCATCTGCCAGTGATGATAGTAGAAGAATCAGAATGCTGCTGAATAATAGGAATATGGGTGTAACTAAGGATGGTCTTTCAAACCCTGTTGGTGATATAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCCGCTTTTCCACGCAGTGATACAGATATGCTAATGAAGTTGAAACTGGCGCAATTACAACATCAGCAACAGCAGAATGCCAATCCACCACAGCAGCAACTGCAACAGCATACTCTTTCGAATCAGCAATCTCAGACATCAAATCATAGCATGCATCAGCAAGATAAAATGGGAGGAGGTGGTGGTAGTAGTGTCAATGTGGATGGTAGCATGTCAAATTCCTTTAGAGGAAATGATCAGACTGGGAGAAAGAGAAAGCAACCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCACCCTCAACTCCCTCAACACATACACCTGGTGATGTGATGTCAATGCCTGTTTTACCTCATAGTGGTAGCTCTTCAAAGCCATTAATGATGTTTAGTGCTGATGGCGCTGGAACTCTGACATCACCTTCAAACCAATTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCCCCTGATGATACAGACCTTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAATAAATTCTGTACGTGCAAGCACTACCAAAGTTGGCTGTTGCCATTTTTCATCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTGTGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCATGCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCACATGACAAAACTGTCAGAGTTTGGGATGTTGAAAATCCTGGATATTCGCTTCGTACCTTTACGGGACATTCTTCACCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGCTGATGGTGAGATACGATATTGGAGCATTAACAATGGCAATTGTGCTAGAGTCTCGAAGGGTGGCGCTGTTCAGATGAGATTTCAACCTCGCCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACACAAGCATCTCGATATTCACTAAAGGGACATACAAAATCAATACGTTCTGTGTGTTGGGATCCTTCTGGGGAGTTTCTGGCATCTGTCAGTGAGGACTCTGTCAGAGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGTAATGGCAACAAGTTTCACTCATGTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCTCATGAAGGTCTTATTGCGGCATTGGCGGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2724 0.4486 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQKLQHQQQQQQQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQILDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTPQHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGGPAFPRSDTDMLMKLKLAQLQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMGGGGGSSVNVDGSMSNSFRGNDQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENPGYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQMRFQPRLGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1744 907 Gene3D - 595 752 IPR015943 GO:0005515
Gso17g1744 907 SMART WD40_4 616 655 IPR001680 GO:0005515
Gso17g1744 907 SMART WD40_4 868 907 IPR001680 GO:0005515
Gso17g1744 907 SMART WD40_4 783 821 IPR001680 GO:0005515
Gso17g1744 907 SMART WD40_4 701 741 IPR001680 GO:0005515
Gso17g1744 907 SMART WD40_4 827 866 IPR001680 GO:0005515
Gso17g1744 907 SMART WD40_4 658 697 IPR001680 GO:0005515
Gso17g1744 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 708 746 - -
Gso17g1744 907 SUPERFAMILY WD40 repeat-like 617 907 IPR036322 GO:0005515
Gso17g1744 907 MobiDBLite consensus disorder prediction 155 193 - -
Gso17g1744 907 ProSitePatterns Trp-Asp (WD) repeats signature. 684 698 IPR019775 -
Gso17g1744 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 875 907 - -
Gso17g1744 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 708 750 IPR001680 GO:0005515
Gso17g1744 907 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 907 - -
Gso17g1744 907 Coils Coil 86 106 - -
Gso17g1744 907 Pfam LisH 10 36 IPR006594 GO:0005515
Gso17g1744 907 MobiDBLite consensus disorder prediction 428 529 - -
Gso17g1744 907 MobiDBLite consensus disorder prediction 261 277 - -
Gso17g1744 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 700 IPR001680 GO:0005515
Gso17g1744 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 875 907 IPR001680 GO:0005515
Gso17g1744 907 SMART Lish 8 40 IPR006594 GO:0005515
Gso17g1744 907 Gene3D - 753 907 IPR015943 GO:0005515
Gso17g1744 907 MobiDBLite consensus disorder prediction 243 277 - -
Gso17g1744 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 665 700 - -
Gso17g1744 907 CDD WD40 619 907 - -
Gso17g1744 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 654 IPR001680 GO:0005515
Gso17g1744 907 Coils Coil 124 147 - -
Gso17g1744 907 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gso17g1744 907 MobiDBLite consensus disorder prediction 428 555 - -
Gso17g1744 907 Pfam WD domain, G-beta repeat 788 820 IPR001680 GO:0005515
Gso17g1744 907 Pfam WD domain, G-beta repeat 662 697 IPR001680 GO:0005515
Gso17g1744 907 Pfam WD domain, G-beta repeat 628 654 IPR001680 GO:0005515
Gso17g1744 907 Pfam WD domain, G-beta repeat 870 907 IPR001680 GO:0005515
Gso17g1744 907 Pfam WD domain, G-beta repeat 704 741 IPR001680 GO:0005515
Gso17g1744 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 790 830 IPR001680 GO:0005515
Gso17g1744 907 MobiDBLite consensus disorder prediction 155 179 - -
Gso17g1744 907 MobiDBLite consensus disorder prediction 98 119 - -
Gso17g1744 907 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 907 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1744 Gso-Chr17 33758477 33769871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1744 627 822 U-box Gene Family AT2G33340 31.884 2.41e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso17g1744 WD40 0.081 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1744 - - gmx:100809084 1519.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1042 14 17291803 17307809 Gso17g1744 17 33758477 33769871 GST
Gso17g1744 17 33758477 33769871 Gso4g0605 4 5844319 5854097 PCT
Gso17g1744 17 33758477 33769871 Gso6g0605 6 5593181 5606284 PCT
Gso4g0605 4 5844319 5854097 Gso17g1744 17 33758477 33769871 PCT
Gso6g0605 6 5593181 5606284 Gso17g1744 17 33758477 33769871 PCT