Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1728 ATGAGAACTATGATGGTTTTGCTAGTGAAAGGAGAAGAGTTTGTTTTCCGTCAAATTGTAATAAAAGGTTCAAGTTACACTTTGCCGTTGTTGATGGCACGACCTGGGAGCCTAAACGGCAGTCAGCATGTTATAGAAATAGCTGGGAGCGCCTATGCTTCCACATCGTCTGCATCACATCATGATAGACATTTTAATGGCACAGATGTGACGCAGCATGAAGAAAGAATTAGTGGTGCAAGGATGCCTCCTCTTTCTCAGCCTTCGGTTTCAGCAACTAGTGTATCTAATGGGTCAAATAGTAGGAATTCATCGTTTATAAGACGTGGGGATACTCGGCGGAATAGGAGTCCTGTGCATTCAGGGTTATGGATATCTATTGAGCTGGTCCTACTAGTGAGCCAGATTGTTGCGTCTATCATTGTTTTGTCTTTGTCAAGGCATGAACATCCACGTACCCCATTGTTTCATTGGATCATTGGTTATGCTTCTGGATGCGCTGCTACCCTCCCTCTGCTTTATTGGCGTTATTATCATCATAACCATATGCGAGAGCAAGATTCATCTCAATCAAGGCAATCATCTCCTCGGATTAATGATCCTTCAGGGACACTTCTTTTCAGTTCCAGAACTAACAGTGGAGAAGATGGTCAGGCTGCTGTTGCATCCTCCAGAAGCAATCAAGCTTCATTATTGATGAATAGAAGAATGAAGACACTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTGTTGAAGAAGCTCCTAATTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGCATTGGTTATGCCATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCTATCCTTGGGGTTAGAGAGGATATGTCACAAAATAGAGGGGCAGCTTCCGAATCTATTAATGCTTTGCCAATTTACAAGTTCAAGACGAAGAAAAATAAAAGAAATGGTGATAGCAACTCAGCTGCTGCCGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGTGTGATATCTGGAGAAGATGCGGTTTGCTGCATCTGCCTGGCAAAGTATGAGAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTTGATAAATGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGATGTTGGTGAAAACTTAACCGGATCAGTCTCTGGAGAAGATGCCAGCCAACAACGGGGTGAGAGCAGGGTTGAGAATGGCCTCACGAATACCTCAGTCTAG 1353 0.425 MRTMMVLLVKGEEFVFRQIVIKGSSYTLPLLMARPGSLNGSQHVIEIAGSAYASTSSASHHDRHFNGTDVTQHEERISGARMPPLSQPSVSATSVSNGSNSRNSSFIRRGDTRRNRSPVHSGLWISIELVLLVSQIVASIIVLSLSRHEHPRTPLFHWIIGYASGCAATLPLLYWRYYHHNHMREQDSSQSRQSSPRINDPSGTLLFSSRTNSGEDGQAAVASSRSNQASLLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSVEEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGAASESINALPIYKFKTKKNKRNGDSNSAAAEGGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSDVGENLTGSVSGEDASQQRGESRVENGLTNTSV* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1728 450 Pfam Ring finger domain 375 416 IPR001841 -
Gso17g1728 450 ProSiteProfiles Zinc finger RING-type profile. 375 416 IPR001841 -
Gso17g1728 450 MobiDBLite consensus disorder prediction 84 106 - -
Gso17g1728 450 CDD RING-H2_RNF111_like 374 418 - -
Gso17g1728 450 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 32 442 - -
Gso17g1728 450 SUPERFAMILY RING/U-box 367 422 - -
Gso17g1728 450 MobiDBLite consensus disorder prediction 426 450 - -
Gso17g1728 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 424 IPR013083 -
Gso17g1728 450 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 32 442 - -
Gso17g1728 450 MobiDBLite consensus disorder prediction 57 117 - -
Gso17g1728 450 SMART ring_2 375 415 IPR001841 -
Gso17g1728 450 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1728 Gso-Chr17 32795419 32805740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1728 108 426 C3H Transcription Factor Family AT1G80400 58.204 7.39e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1728 - - gmx:100785559 854.358