Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1719 ATGGGAGAAGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTTGAGTGCAATGACATTAATGTGAATATGACTGAGAAGGAAGTGTATCCTCCAGAATCAAATGTGGAGCACTTACCTGGAGAAGAATCGAGTCAATCAACAGACCACAAAAATATCAATGACTTGCAAGAGAGAGGATATATGGAGTATGGATGTCAGCATTACCGGAGAAGATGCCGTATCAGGGCCCCATGTTGCAATGAGATTTTTGATTGCCGCCATTGTCATAATGAGGCAAAAAATGATATCAACATTGATCAGAAGCATAGACATGATATTCCACGACACCAAGTCAAACAGGTGATTTGTTCACTTTGTGGGACTGAACAAGAGGTTCAGCAAAACTGTATAAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGAACATGCAAGCTTTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGAAGCGAAAATTTCTTCCATTGCTACAAGTGTGGTTGTTGCTACTCAACTCTTCTGAAAAACAGTCACCCTTGTGTAGAAGGAGCAATGCATCATGATTGCCCGGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCACTGTTATGCCTTGTGGACATACAATCCATAAGAGCTGCCTGAATGAAATGAGAGAACATTTCCAGTATTCGTGCCCTCTCTGCTTGAAATCAGTCTGTGACATGTCAAAGGTTTGGGAGAAATTTGATATAGAGATTGCTGCTACACCAATGCCTGAGCAATATCAAAATAAAATGGTTTGGATCCTGTGCAACGATTGTGGTAAAACTTCTCACGTTCAGTTCCATTTTGTGGCTCAAAAGTGTCCGAACTGCAAATCCTACAATACACGACAAACATGA 927 0.4088 MGEVAVMHSEPLQFECNDINVNMTEKEVYPPESNVEHLPGEESSQSTDHKNINDLQERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDQKHRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYSCPLCLKSVCDMSKVWEKFDIEIAATPMPEQYQNKMVWILCNDCGKTSHVQFHFVAQKCPNCKSYNTRQT* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1719 308 Gene3D - 272 308 - -
Gso17g1719 308 ProSiteProfiles Zinc finger CHY-type profile. 58 134 IPR008913 GO:0008270
Gso17g1719 308 SUPERFAMILY Zinc hairpin stack 137 194 IPR037275 -
Gso17g1719 308 Pfam Zinc-ribbon 248 306 IPR039512 -
Gso17g1719 308 Pfam CHY zinc finger 65 146 IPR008913 GO:0008270
Gso17g1719 308 SMART ring_2 201 243 IPR001841 -
Gso17g1719 308 ProSiteProfiles Zinc finger CTCHY-type profile. 136 200 IPR017921 -
Gso17g1719 308 Pfam Ring finger domain 200 243 IPR001841 -
Gso17g1719 308 SUPERFAMILY CHY zinc finger-like 62 136 IPR037274 GO:0008270
Gso17g1719 308 SUPERFAMILY RING/U-box 199 247 - -
Gso17g1719 308 MobiDBLite consensus disorder prediction 29 49 - -
Gso17g1719 308 ProSiteProfiles Zinc finger RING-type profile. 201 243 IPR001841 -
Gso17g1719 308 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 23 308 - -
Gso17g1719 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 245 IPR013083 -
Gso17g1719 308 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1719 Gso-Chr17 32541859 32548017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1719 63 306 C2H2 Transcription Factor Family AT3G18290 39.600 4.80e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1719 K10144 - gmx:100803569 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1059 14 18336849 18342931 Gso17g1719 17 32541859 32548017 GST
Gso17g1719 17 32541859 32548017 Gso6g0623 6 5776685 5782447 PCT