Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1690 ATGCCGGGGTTAACGTGCAACGCTTGCAACACCGAATTCAAAGATGACACAGAGCAAAAGCTCCATTACAAATCCGAGTGGCATCGATACAATCTCAAGCGCAAGGTGGCTGGGGTTCCTGGGGTGACCGAAGCGCTATTTCTGGCTAGACAATCTGTGCTTGCTCAAGAGAAAAATAAACTGGGTGAAACCCCCATGCTCTACACCTGTGGTCTTTGTGGAAAGGATTATAAAAGTTCTAAGGCTCATGCTGAGCACCTTAAATCACGTGGTCATATGATGCGGGCCTCTGAAGGAACTAGTCACGCAGATGAGAAGGCAATAGTTAAGCCTCTTCCACAACGTGTTGTGAATAGGCCTCCTCCTAGGAGAGAGGTAGATAACTCTGAAAATGAGGAAAGTGAAGATGAATGGGAGGAGGTTGATCCTGAAGAGGATTTGGTTGACGGTGCTGCAAAGTCCTTGACTGATTTGAATGTGAATGAGCATGGTGAAAATGTTGATATGGAGGTAGATGATGATTTTGAGGAGTTAGACCCCTCTTGTTGCTTTATGTGTGATCAAGAGCACAAAACAATAGAAAACTGCATGGTTCACATGCACAAGCATCATGGGTTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACCTATCTTGGCCTTAAGGTCAAAAGGGACTACATGTGTCTGTACTGCAATGATCGATGTTATCCATTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGAGGCAAAAAGTCACTGTAAAGTGCATTATGGTGATGGTGTTGATGACGAGGAGGTAGAATTAGAAGAATTCTATGATTATAGCAGCAGCTATGTGGATGATCAAGGCAAGCAGCTTGTTGCATCTTGTGATGCATCTAACAATGTAGAACTTGTTGGTGGGTCCGAGCTCATAATCAGCAGGAAATCTGGTGATAGATCATCAACCAAAACACTTGGTTCCCGTGAATTTTTGCGTTATTATCGTCAGAAACCTCGGCCATCACTAGCAAATATGGCTATCACTGCTGCGTTGGCTTCAAGGTACAGGAGCATGGGCTTGACCACTATCCAATCAAGGGAGAAGATTGTGAGGATGAAAGTGCTGAAGGAAATGAATAGGTCAGGTGTGGACAATATGCGTACCAAGATGGCGATGAAGAGTAATGTCATCAGGAACCTGCCAAAGAATGTACCATATTAG 1224 0.4436 MPGLTCNACNTEFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVLAQEKNKLGETPMLYTCGLCGKDYKSSKAHAEHLKSRGHMMRASEGTSHADEKAIVKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEEDLVDGAAKSLTDLNVNEHGENVDMEVDDDFEELDPSCCFMCDQEHKTIENCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGVDDEEVELEEFYDYSSSYVDDQGKQLVASCDASNNVELVGGSELIISRKSGDRSSTKTLGSREFLRYYRQKPRPSLANMAITAALASRYRSMGLTTIQSREKIVRMKVLKEMNRSGVDNMRTKMAMKSNVIRNLPKNVPY* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1690 407 MobiDBLite consensus disorder prediction 115 145 - -
Gso17g1690 407 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Gso17g1690 407 MobiDBLite consensus disorder prediction 130 145 - -
Gso17g1690 407 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Gso17g1690 407 PANTHER ZINC FINGER PROTEIN-RELATED 1 407 - -
Gso17g1690 407 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Gso17g1690 407 Pfam C2H2 type zinc-finger (2 copies) 183 284 IPR041661 -
Gso17g1690 407 PANTHER ZINC FINGER PROTEIN 622 1 407 IPR040025 -
Gso17g1690 407 SMART c2h2final6 232 259 IPR013087 -
Gso17g1690 407 SMART c2h2final6 68 92 IPR013087 -
Gso17g1690 407 SMART c2h2final6 181 203 IPR013087 -
Gso17g1690 407 SMART c2h2final6 4 28 IPR013087 -
Gso17g1690 407 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Gso17g1690 407 SUPERFAMILY beta-beta-alpha zinc fingers 171 242 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1690 Gso-Chr17 31988053 31991176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1690 1 407 C2H2 Transcription Factor Family AT4G31420 66.425 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso17g1690 zf-C2H2_2 4.7e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1690 K14816 - gmx:100796317 783.482