Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1681 ATGGATGAGTATTCTCGTAAAAGAGGTGTAGATGGGATGGTATTCCCTAGAAAGGGGATGGGCCATGTATTTAGAGATACTGCTAATACTAGAGATCGAAATGGTCAAATTTGTAGTCGATTGGGTTGCAGTAGCAGAGCCAATCTTCCCAAAGTTGCTCACGTCAGATCTTCTGAAAAAGGTAAATCTTTGAGGCCTTCATTTCAGTCCTCTTCAAGTAGCAAGGATGCAATTGGAAGTTCCTCTAGAACTACTAGTTACCCAGCAAAACGACTTATAGAACCTCGGAAAACATTATCCTCTCAGTTTGAGGCACATTCATCTGAAACTAGTAGTGTACAGGACGGACCAGAATTTTCAGTGCCCATCCCTCCAACAGAAGAAATTCGGAGAGGGCCTCTAGTTGAAGGAGAAAGTACAGAGTCTAGTAATGCAATATTGATGGAAGTAGGAAGTTCCAGTGCAGTATCAAATACTAGATCTCAAAGAGCTGGATTGCGTGCGCAAGAAATTAAAAGCACTGGTGCAGTGAGGCGGGCTGTTTCCAGCAGGTATGGGTTGAGAAACCTCAAATGCAACTCTATATCTGACGTCGTCCCAGCTGGTTGTTCACCGTTGGATTCAAGCCTTAATAGAAGGAAGGATACAATAAAAAAGGGAAACTGTGAAGGGGGAAATAGTTCCACTGTTAGGGGGAAAAATATCACTGGGTCTTCACTGGAAGGACGGAATTCTGGCTCCAGAAATGGCATATCTATATCCGATTCAAGAAGATCTAGAAATGTTCCTTCTCACCGGAGCACCAGCGTGGCATCAGTAAGAACTCAAAGATCAATTAGTGGTCAAGCCAGGGGAAGGTTTTGTAGCCAAGGAAACGAAAACCCTGTGGCAAGCAGTGATTCCCCTCTTAACATTCCCCTTTCACCTCATTCTGGTGATCTTGATGCTCCTGGCTTTTCATATCATACTTCTATGGAGACTCCTCTAAGTGGCTCAAGCTCTTATGGTAGACCAGGCAATAGCAGTGAGCAGTTAAGTGGTGTTATGCCTGCATCTCCTGCAGAAGATGACAACACTCATTCTCTAATAAATAGGGATAGCTTTCGACATTACAACATGGGTGGTATTGCAGAGGTGTTATTGGCACTTGAGAGGATTGAACAAGATGCAGAGCTAACCCATGAGCAAATTCTTTTGTTGGAGGCCAACTTGTTCCTCAGTGGATTAAACTTTTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTTTTAGCTCTAGAAGAGAGAATGGGAACTGTGAGCACCGCTCTGCCGGAGGAAGCACTTGCAGAATGTCTGAAAAGAAGTAAATATCAGTCTGCACCTTTAGATGATGCAGATGAGAGTTGTAATGAGGATAAGGATGATATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAGTTGGGGATCTGCAATGTGAACATAGATTTCATGTGGTTTGCATACAGGAGTGGATGCGGCTTAAGAACTGGTGCCCTGTTTGTAAAGTATCTGCAGCACTGTCCAATTCATTTTTACCTCATTGA 1599 0.4334 MDEYSRKRGVDGMVFPRKGMGHVFRDTANTRDRNGQICSRLGCSSRANLPKVAHVRSSEKGKSLRPSFQSSSSSKDAIGSSSRTTSYPAKRLIEPRKTLSSQFEAHSSETSSVQDGPEFSVPIPPTEEIRRGPLVEGESTESSNAILMEVGSSSAVSNTRSQRAGLRAQEIKSTGAVRRAVSSRYGLRNLKCNSISDVVPAGCSPLDSSLNRRKDTIKKGNCEGGNSSTVRGKNITGSSLEGRNSGSRNGISISDSRRSRNVPSHRSTSVASVRTQRSISGQARGRFCSQGNENPVASSDSPLNIPLSPHSGDLDAPGFSYHTSMETPLSGSSSYGRPGNSSEQLSGVMPASPAEDDNTHSLINRDSFRHYNMGGIAEVLLALERIEQDAELTHEQILLLEANLFLSGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALPEEALAECLKRSKYQSAPLDDADESCNEDKDDIKCCICQEEYVVGDEVGDLQCEHRFHVVCIQEWMRLKNWCPVCKVSAALSNSFLPH* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1681 532 Coils Coil 383 403 - -
Gso17g1681 532 MobiDBLite consensus disorder prediction 221 306 - -
Gso17g1681 532 Pfam Ring finger domain 478 520 IPR001841 -
Gso17g1681 532 SMART ring_2 479 519 IPR001841 -
Gso17g1681 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 524 IPR013083 -
Gso17g1681 532 ProSiteProfiles Zinc finger RING-type profile. 479 520 IPR001841 -
Gso17g1681 532 MobiDBLite consensus disorder prediction 216 361 - -
Gso17g1681 532 MobiDBLite consensus disorder prediction 100 117 - -
Gso17g1681 532 SUPERFAMILY RING/U-box 473 523 - -
Gso17g1681 532 MobiDBLite consensus disorder prediction 62 88 - -
Gso17g1681 532 MobiDBLite consensus disorder prediction 52 128 - -
Gso17g1681 532 MobiDBLite consensus disorder prediction 323 348 - -
Gso17g1681 532 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 524 - -
Gso17g1681 532 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 524 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1681 Gso-Chr17 31534104 31540095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1681 376 523 C3H Transcription Factor Family AT2G15530 42.568 4.11e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1681 - - gmx:100803211 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1681 17 31534104 31540095 Gso4g0643 4 6272336 6276739 PCT
Gso17g1681 17 31534104 31540095 Gso6g0645 6 5972600 5977043 PCT
Gso4g0643 4 6272336 6276739 Gso17g1681 17 31534104 31540095 PCT
Gso6g0645 6 5972600 5977043 Gso17g1681 17 31534104 31540095 PCT