Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1643 ATGTCACTGCATCGCGATCGCAATTGGAAACCTCTTACAATGAGAGTTTCAGCCCAGAATTCCACCTCATTCTTACCTTCATCACCGTCTTCGTCGTCGCCACCACTGTCGTCCGAATCCAAGACAGAGAAACGCAACCGCGAGTCGAACAATCACCCGGTGTACCGAGGGGTGCGGATGCGGAACTGGGGGAAATGGGTGTCCGAAATCCGCGAGCCGCGCAAGAAGTCACGCATATGGCTGGGTACATTCCCCACGCCGGAAATGGCGGCGAGGGCACATGACGTGGCAGCCCTCGGTATAAAGGGGAATAACGCCATTCTCAACTTTCCTGAACTCGCGGCCTTACTCCCCCGTCCAGTGTCCTTAGCCTCCCGCGACGTGCAGGCTGCTGCAGCCAAGGCGGCTCACATGGACCTGCCTTCTTCGTCTTCTTCCATTTCATTGTCTTTGGGTTCAACTACTCCGTCTTCGTCATCTTCATCTCTATCCTCCTTAGCTTCCACCGCGGACTTGTTGTTGTTGTCCACTGCCTCAGAGGAACTGAGCGAGATCATCGAGTTGCCGAGGCTGGAAACAACGAGTTACGAGCTGGGGAACGAGTTTGTGTTCATGGACTCGCAGGACACGTGGATGTATCAGCCACCGATACCGTGGTTACATACTACATACGACGGTTCTGATGCAAATGAGTTTGCAGTGCCAGAGAGTCGGGTTATGACTAATTTTGAGGGTTTTCTGTGGGACTACTGA 753 0.5365 MSLHRDRNWKPLTMRVSAQNSTSFLPSSPSSSSPPLSSESKTEKRNRESNNHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALGIKGNNAILNFPELAALLPRPVSLASRDVQAAAAKAAHMDLPSSSSSISLSLGSTTPSSSSSSLSSLASTADLLLLSTASEELSEIIELPRLETTSYELGNEFVFMDSQDTWMYQPPIPWLHTTYDGSDANEFAVPESRVMTNFEGFLWDY* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1643 250 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Gso17g1643 250 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Gso17g1643 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 249 - -
Gso17g1643 250 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
Gso17g1643 250 MobiDBLite consensus disorder prediction 13 39 - -
Gso17g1643 250 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Gso17g1643 250 MobiDBLite consensus disorder prediction 1 54 - -
Gso17g1643 250 MobiDBLite consensus disorder prediction 40 54 - -
Gso17g1643 250 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Gso17g1643 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 25 249 - -
Gso17g1643 250 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Gso17g1643 250 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Gso17g1643 250 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1643 Gso-Chr17 29137588 29139026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1643 29 225 AP2-EREBP Transcription Factor Family AT5G11590 59.903 7.11e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso17g1643 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1643 K09286 - gmx:100816404 399.823