Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1636 ATGGTCAAATCCAAAGGATACCATCACCTTTGCGGCACCCTCTTCCTTCCAACACCTAGGTCTCCAATCGCCCATTACAAGTTGGAGAAAGAGAAAATATGGCGAGAGCTAGAGAAGGAAGGAATCAGGAGAGAAATCATTGCTCGCGAGATGGCATTTGCACAACGACGAGAACTGGAAGATGAAGTGAGAAAAGAACTAGAATTGGAGAGAACATTTAGAATCTCGATGCAAAGATCAGATGGGATCACATTTCGAGAACCAATTTCAGTGTCTTTTAATCACAGTATGGGTCCATTGAATAATATTACCATGTCTGGAGGGCTACCATTCCATTTACTGTCACAAGCTTCTAAGCAAATTAACAAGGATAAAGTGATTATACTAATTCCATTGCAGAATAAGCCAGATGATCATTGTGGTGAAAAGCGCAAAGCAATGACACTTGCAATTGATGACAATGAGAGTCTACAGAAGAAATCCAAGAAGGAGTGGAGTTGCGAGTTGTGTCAAATTTCTGCAACAAGTTTGAAAGGCTTGAATGATATTCAAGGGAAAAAACATAAGGCTAACAAAGAATCCACTAGAACTCAAAAAATAGGGCTGGATTCAAGACCAGAAAGTGAAACACTTCATCCTTGTTTAACACCCGTGGACACATGCAAACTGGAATCTAAAGTAAAGGGCCAGGTTGTCCAAACGAGCAAAGGTTTAGGTGATTTGGACGATCAAAATGAAACAACTACTAGTAAACAAGCACAGGAAACAAGCGCACTGTCAAAAGGGAAGAAATTTGAATTTTGGTGTGAGCTTTGTCAAGTTCAAACTCAATCAGAAATTGTCATGCAAAGTCATAAGAATGGAAAAAAACACTTGACAAATATGAAGAAATTTAACCACAACAATGATAGGTGTGACTTTGCATCAGGTGGCTTTCCTAGCAATGTTTCAGCGCCTAGAGTTTTCCCAATGGTCATGCCGATCAATGTCAACGAAGTATTCCAACGAGAGTTGGAGAAAGAGCAAATATGGCGAGAGCTAGAGAAGGAAAAAATCAGGAGAGAAATCATTGCTCGTGAGATGGCTTTTGCACAACGACGAGAGTTGGAAGACGAAGTGAGAAAGGAAATGGAATTAGAGAGAACATCTAGAATGTCGATGCAAAGATCAGAGGGGATTGCATTTCGAGAACCAATTTCAGAGTCTATTAATCAGAGTCGGTTGAATAACATTACCATGTTTGGTGGGCTACCATTCCATTTATCGTCCCAAGCTTCTAAGCAAATTCACACGGATAATATCCTATTTGATAACAAAGAAGCTTCTAATAGCAAGGATAAAGTGATTATATTGAATAAGCCAGATGATCATTGTGGAGAAAAGCGCAAAGCAATGACACTTGCAATTGATGACAATGAGAGTCTACGGAAGAAAGCCAAGAAGGAGTGGACTTGCGAGTTGTGTCAAATTTCTACAACAAGTGAGAAAGGCTTGAATGATCATATTCAAGGGAAAAAACATAAGGCTAACAAAGAATCCACTAGAACTCAAAAAATAGGGCTGGATTCAAGACCAGAAAGTGAAACACTTCATCTTTGTTTCACACCCGCGGACACATGCAATATGGAATCTGAAGAAAAGGGCCAAGTTGTCCCAAAGAGCAAAGGTTTAGGTGATTTGGACGATCAAAATGAAACAACTACTAGTAAACAAGCACAGGAAACAAGCGCACTATCAAAAGGGAAGAAATTTGATTTTTGGTGTGAGCTTTGTCAAGTTCAAACTCAATCAGAAATTGTCATGCAAAGTCATCAAAATGGAAAAAAACACTTGAGAAATATGAAGAAATTGAATCACAACAATGATGGTGTTGCAAATCTTGGATAA 1887 0.3906 MVKSKGYHHLCGTLFLPTPRSPIAHYKLEKEKIWRELEKEGIRREIIAREMAFAQRRELEDEVRKELELERTFRISMQRSDGITFREPISVSFNHSMGPLNNITMSGGLPFHLLSQASKQINKDKVIILIPLQNKPDDHCGEKRKAMTLAIDDNESLQKKSKKEWSCELCQISATSLKGLNDIQGKKHKANKESTRTQKIGLDSRPESETLHPCLTPVDTCKLESKVKGQVVQTSKGLGDLDDQNETTTSKQAQETSALSKGKKFEFWCELCQVQTQSEIVMQSHKNGKKHLTNMKKFNHNNDRCDFASGGFPSNVSAPRVFPMVMPINVNEVFQRELEKEQIWRELEKEKIRREIIAREMAFAQRRELEDEVRKEMELERTSRMSMQRSEGIAFREPISESINQSRLNNITMFGGLPFHLSSQASKQIHTDNILFDNKEASNSKDKVIILNKPDDHCGEKRKAMTLAIDDNESLRKKAKKEWTCELCQISTTSEKGLNDHIQGKKHKANKESTRTQKIGLDSRPESETLHLCFTPADTCNMESEEKGQVVPKSKGLGDLDDQNETTTSKQAQETSALSKGKKFDFWCELCQVQTQSEIVMQSHQNGKKHLRNMKKLNHNNDGVANLG* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1636 628 MobiDBLite consensus disorder prediction 604 628 - -
Gso17g1636 628 SUPERFAMILY beta-beta-alpha zinc fingers 580 617 IPR036236 -
Gso17g1636 628 SMART ZnF_U1_5 583 617 IPR003604 GO:0003676|GO:0008270
Gso17g1636 628 SMART ZnF_U1_5 264 298 IPR003604 GO:0003676|GO:0008270
Gso17g1636 628 SMART ZnF_U1_5 480 514 IPR003604 GO:0003676|GO:0008270
Gso17g1636 628 SMART ZnF_U1_5 162 195 IPR003604 GO:0003676|GO:0008270
Gso17g1636 628 Gene3D Classic Zinc Finger 246 298 - -
Gso17g1636 628 Gene3D Classic Zinc Finger 565 617 - -
Gso17g1636 628 Gene3D Classic Zinc Finger 462 513 - -
Gso17g1636 628 SMART c2h2final6 483 507 IPR013087 -
Gso17g1636 628 SMART c2h2final6 267 291 IPR013087 -
Gso17g1636 628 SMART c2h2final6 586 610 IPR013087 -
Gso17g1636 628 SUPERFAMILY beta-beta-alpha zinc fingers 473 514 IPR036236 -
Gso17g1636 628 PANTHER OS06G0651300 PROTEIN 29 299 - -
Gso17g1636 628 PANTHER OS06G0651300 PROTEIN 319 619 - -
Gso17g1636 628 SUPERFAMILY beta-beta-alpha zinc fingers 261 297 IPR036236 -
Gso17g1636 628 MobiDBLite consensus disorder prediction 237 256 - -
Gso17g1636 628 PANTHER OS06G0651300 PROTEIN-RELATED 319 619 - -
Gso17g1636 628 PANTHER OS06G0651300 PROTEIN-RELATED 29 299 - -
Gso17g1636 628 MobiDBLite consensus disorder prediction 543 574 - -
Gso17g1636 628 Pfam Zinc-finger of C2H2 type 267 291 - -
Gso17g1636 628 Pfam Zinc-finger of C2H2 type 483 507 - -
Gso17g1636 628 Pfam Zinc-finger of C2H2 type 586 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1636 Gso-Chr17 28387094 28395082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1636 476 614 C2H2 Transcription Factor Family AT5G61190 28.667 3.95e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1636 - - gsj:114391619 1253.43