Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1618 ATGGACGGTGAGCAGAGCATGGCTGCTCCATCTCATGGGCAAGTTGATGGTGCTCAGAAAGTTAGAGCATTACATGGGAGGACTACTGGCCCTACAAGGCGTTCTACAAAAGGGCAATGGACACCGGAGGAGGATGATACCTTACGGAATGCTGTTGAGAGATTCAAAGGAAAAAATTGGAAAAAAATTGCTGAATGTTTCAAGGATAGAACTGATGTGCAATGCCTACATAGGTGGCAGAAAGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATTGAATTGGTGAAGAAACATGGGCCTAAAAAGTGGTCAACTATAGCACAACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGGTTAATCATCTTGATCCTACTATAAAAAAGGAAGCGTGGACTCAGGAAGAGGAGTTGGCTCTAATACATTATCATCAGAGTTTTGGGAACAAATGGGCCGAATTGTCGAAGGTCATTCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTATTTGGCATCAGGCCTGCTTACTCAGTTTGAATCTGTTCCTCATGCTGGAAATTTGAATCAACCAACAAGGTTGCAGTGTAGTAGAGATGATAATGGTCCCAAGTCGACTGAAGGAGAGGAAGTTTCAGATTGCAGCCAAGGTTCAGCTAATGCTGTTTACTTTCCATCTGCTACAGGTCCGAGCAGTGTTGACTTGCAAACTGGAGAGGCATATAGGCCAAATGAAGAATGTAGTCTTGGAAAGGATCATAGTCCGAGTCGAGCTTGTTCAGAGCCATATTATGTATCAATTGATGATGTTACTATATGCATCCCAGAAATTGCTCACCAAGAGGCTTGCACTTCTCAATTCATTGAGCAACAGTCACATGAACCTGGAAATTCCATTTGTGGGGATTGCCAGTTCAATTTACATTCCTTACCCAATGTTTCATCAATGGTCTTGGGGCAGGAATCCTCGGAGTTGCAAAGAGATTTTATAGCTCCTTGTGAAATCTGTGACATGGTGAATGCTCCATTTCAGACTTCAGTGGAGTTAGGTGTTTCAACGTCCATGGGACCTGCATCTATGGATTCTCTAAAACCAGAGCACATGTTGATATCTGATGATGAATGCTGCAGAGTCCTGTTTTCAGACGCAATGAATGATGGGTGTTTCCCTCGTGTAGATTATAATAAACGTGATGATATAGTTGAATTTTCTGGATGCACTTCATTTTGTCAATCTTGTAATATCCAGATATCTGAAACTGGTGGAACCTCAACTTCACAGCTAACTTGTCCTCAGTGTTCTAATAATTATAAAGGAATTTCATCCTCCCAATCTGTCCCTCTAGTACTTTCTGCTAGTGATGATAGGTTGGGGCCTACTGCCAACGGCAATCAATTATTTGGGATGGAGGATCACCACTTTGTCTCCAGAGCATGTGCTAACTTCACTTATGTCAACAACATATCCAGTTCTTGTGTTGATGGGGTAGGTAGTGCAGTAATGGAAGAGCCACATGATATTCTGAAGGGTACTTCAAAATTGGTCCCTGTAAATAATTTTGGCTGTGGATCAGATGCTAAGCAAACTTGTAATCCAACAGCTGAAAAAACAAATGTGCATACAGAAAAGGAGGGCTCAGGATCTCTATGTTATGAACCTCCCCGCTTTCCAAGTTTGGATATTCCTTTCTTCAGTTGTGATCTTGTACAATCTGGGAGTGATATGCAGCAAGAGTTTAGTCCATTGGGTATCCGCCAGTTTATGATGTCATCTATGAACTGTCTTACTCCTTTTAGGTTGTGGGACTCACCCTCTTGTGATGATAGTCCAGATGCACTGTTAAAAAGTGCTGCTAAAACTTTTACTGGTACACCATCCATATTAAAGAAACGACCCCGAGATTTGTTGTCACCACTCTCAGATAAAAGAATGGATAAGAAACTTGAGACTGACATGGCATCATCTACGTTTACCAGAAACTTTTCCAGTTTGGTTGCTGCATTTGGTGACAATGAGACTCGAAAAGCAGATATGCCTTCATATTCATATCCATTGCAAAAACAGAACAGCAGGGCATCTGTTGATGATGATAATAAAGAAAATTGTGGACACACTTATAAATGGGAACAATTAATGAATTGTTCCCCAATTAAATCTGCAACTTTGGATGAAAAGAACTCTCAAAGAGATACTGTTGACGGCAATTCTCAGCATAATGTCAAGCAACGACCTCTTGATTCTAAAATGAAGACTACTGAGATTGAGCAACAACAATCTGGAATTTTGGTCGAACATGATATGAATGACCTGTCACTGTCTTCTCCTGATCAAGTTGGTTTAAAATCAGATAGAGGTCTGGATTCAAGTGCTAAAATTACAAAAGGCTTGAACAAGTCCTTGGAAGCAGCTTCAAATCAGAGTGGCCATTTGAAATTATCTTCTAAAAATCCATGCCCAAGGGTTAATTCTTGTTCTCCTTGTGTTCGCGCTAAAGAGCATGAAGGACTTTCAGTTGCTGTTACTCGTGTTCAAGCTCCAGGGGACAATTCAGGGGAACAAACCAGAAAAGATGGTGGTTTTGAAACATGTAGCATCTTTGGTGGAACACCTTTTGGAACACCTTCTGCGTGGAAATCCCCTTGGTTCTTCAACACTTTTCTATCTAGCCCCAGACTTGATACTGAAATTACAATTGAGGATTTTGGGTATTTTATGAGTCCAGGTGATAGAAGCTATGATGCACTCGGATTGTTGAAACATATCAGTGAACAAACTGCTGCCACATATGCCAATGCTCAGGAGATTTTAGGAAATGAAACTCCCAAAGCATTACCAAAAGATGCATCTGAAAACGACAAGGATAAGGACCATGAAAATAATTATCCTGTCAATCAGTCTGGGAACCATTCTCAGTTGCCTTCAAATGCTTTGATAGAGCGACGCACACTTGACTTTAGTGAATGTGAAACACCAGGCAGAGATGAAAACAGCAAATCCTCAGCTATGAGCTTCTCAAGCCCTTCTTCGTATTTGATGAAAGGTTGTAGATGA 3120 0.4077 MDGEQSMAAPSHGQVDGAQKVRALHGRTTGPTRRSTKGQWTPEEDDTLRNAVERFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIELVKKHGPKKWSTIAQHLPGRIGKQCRERWVNHLDPTIKKEAWTQEEELALIHYHQSFGNKWAELSKVIPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQFESVPHAGNLNQPTRLQCSRDDNGPKSTEGEEVSDCSQGSANAVYFPSATGPSSVDLQTGEAYRPNEECSLGKDHSPSRACSEPYYVSIDDVTICIPEIAHQEACTSQFIEQQSHEPGNSICGDCQFNLHSLPNVSSMVLGQESSELQRDFIAPCEICDMVNAPFQTSVELGVSTSMGPASMDSLKPEHMLISDDECCRVLFSDAMNDGCFPRVDYNKRDDIVEFSGCTSFCQSCNIQISETGGTSTSQLTCPQCSNNYKGISSSQSVPLVLSASDDRLGPTANGNQLFGMEDHHFVSRACANFTYVNNISSSCVDGVGSAVMEEPHDILKGTSKLVPVNNFGCGSDAKQTCNPTAEKTNVHTEKEGSGSLCYEPPRFPSLDIPFFSCDLVQSGSDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSCDDSPDALLKSAAKTFTGTPSILKKRPRDLLSPLSDKRMDKKLETDMASSTFTRNFSSLVAAFGDNETRKADMPSYSYPLQKQNSRASVDDDNKENCGHTYKWEQLMNCSPIKSATLDEKNSQRDTVDGNSQHNVKQRPLDSKMKTTEIEQQQSGILVEHDMNDLSLSSPDQVGLKSDRGLDSSAKITKGLNKSLEAASNQSGHLKLSSKNPCPRVNSCSPCVRAKEHEGLSVAVTRVQAPGDNSGEQTRKDGGFETCSIFGGTPFGTPSAWKSPWFFNTFLSSPRLDTEITIEDFGYFMSPGDRSYDALGLLKHISEQTAATYANAQEILGNETPKALPKDASENDKDKDHENNYPVNQSGNHSQLPSNALIERRTLDFSECETPGRDENSKSSAMSFSSPSSYLMKGCR* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1618 1039 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Gso17g1618 1039 MobiDBLite consensus disorder prediction 968 983 - -
Gso17g1618 1039 MobiDBLite consensus disorder prediction 960 1039 - -
Gso17g1618 1039 PANTHER MYB PROTEIN-RELATED 4 1038 - -
Gso17g1618 1039 SMART sant 88 137 IPR001005 -
Gso17g1618 1039 SMART sant 140 188 IPR001005 -
Gso17g1618 1039 SMART sant 36 85 IPR001005 -
Gso17g1618 1039 MobiDBLite consensus disorder prediction 746 808 - -
Gso17g1618 1039 Gene3D - 36 88 - -
Gso17g1618 1039 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Gso17g1618 1039 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Gso17g1618 1039 CDD SANT 143 183 IPR001005 -
Gso17g1618 1039 MobiDBLite consensus disorder prediction 984 1000 - -
Gso17g1618 1039 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Gso17g1618 1039 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Gso17g1618 1039 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Gso17g1618 1039 MobiDBLite consensus disorder prediction 774 801 - -
Gso17g1618 1039 MobiDBLite consensus disorder prediction 209 237 - -
Gso17g1618 1039 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Gso17g1618 1039 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Gso17g1618 1039 CDD SANT 40 83 IPR001005 -
Gso17g1618 1039 MobiDBLite consensus disorder prediction 1 45 - -
Gso17g1618 1039 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Gso17g1618 1039 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Gso17g1618 1039 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Gso17g1618 1039 Gene3D - 142 201 - -
Gso17g1618 1039 MobiDBLite consensus disorder prediction 698 722 - -
Gso17g1618 1039 MobiDBLite consensus disorder prediction 1018 1033 - -
Gso17g1618 1039 CDD SANT 91 135 IPR001005 -
Gso17g1618 1039 PANTHER TRANSCRIPTION REPRESSOR MYB5 4 1038 - -
Gso17g1618 1039 Gene3D - 89 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1618 Gso-Chr17 27176486 27185747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1618 4 1039 MYB Transcription Factor Family AT4G32730 42.210 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g1618 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1618 - K09420 gmx:100794559 2137.07