Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1578 ATGGGAAATAGGCTCTATCTTTCAGTGTTTCTGGTTTTTGTAACAGTTTTACTTTCAATCTTTCATACAGAGCAACTGCAATCCTCTGACTCTAAAACCCTTCTAAGAATTCAACAGCAATTGAACTTTCCACCAGTTTTAAGCAGCTGGAACAAAAACACAGACTTTTGCAGCACAGATTCAACATCTTCTCTTACTGTTGTGTGCTATGAAGGCACCATAACTCAGCTGCACATAGTTGGTGAAACAAGAGCTCTACTCCTCCCTAGAAATTTCTCAATAGATTCCTTTGTCAGAACACTGGTTAGGCTTCCAAGTTTGAAAGTCCTCACTTTGGTTTCTCTTGGCATATGGGGTCCATTGCCGGGTAAGATTGCTCATCTGTCATCACTCGAAATAGTCAATGTGAGTTCAAATTTTCTGTATGGTTCCATCCCTTTACAGTTCTCATTACTGTCACATCTCCAAACACTCATTCTAGATGACAACATGTTTTCTGGCCACCTTCCTGAATGGCTGGATTCCTTTCCAGCCCTGACTGTGCTGAGTTTGAAAAACAACTTGTTCAACAGCTCCCTCCCAGATTCGCTAAATAGCTTGGAGAATCTGAGGATTCTTTCACTTTCTCATAACCATTTTTATGGACCGGTGCCTGATTTGGGCCGTTTGGCAAATCTTCAAGTGCTGGAATTGGATGATAATGCTTTTGGACCTCGGTTTCCACAGCTTGGTGACAAATTGGTTACTATAGTACTAAGAAACAATAAGTTCAGGTCTAGTATCCCTGATGAAGTGAGTTCATATTATCAACTTGAGAAACTTGACATCTCAGCAAACACATTTGTTGGCCCATTCCAGCTAGCACTGTTATCACTTCCTTCTATTACTTATGTGAACATTTCTGGAAACAAATTAACAGGAATGCTTTTTGAGAATCTGTCCTGCAATCCTGGACTTGAAGCAGTGGATTTATCCTCAAATCTTTTGACTGGGAGCTTACCAAAATGTTTAATGTCAAATTCCAATGACAGGACTGTCTTGTATGCTAGAAATTGTCTAGAGACAAATCAAAATCAGCATGCACTGCCCTTTTGCCACACTGAAGCCATAGCTGTGGGAATTGTGCCTGAGGGAAAGAAGCACAAACGAGTATCTAAGGAAGTTCTCTCCATTGGGATAGTATGTGGAACTTTTGGAGGAGTAGCAATTGTTGCACTGCTTTTCTTTATTATCAGAAGAGAAAGTGTCAAAAGCAAAATCAAGAATCCTCCAACAAAATTAATATCAGAGAATGCAGCTTCTGGATACACCTCTAAGTTAATCTCTGATGCAAGGTATATATCTCAAACAATGAAGTTCGGAACAGTTGGTCTGCCTCCTTATCGAGTTTTCTCACTAGAAGAGATTGTAGCAGCTACAAACAACTTTGACTCAGCTTCTTTTATGGGTGAAGGTTCTCAGGGAAAGATGCACAGAGGTCAACTAAAGGATGGTTTACTTGTTGCCATTAGAAGTGTAAAAATGAACAGAAGCTACAGCACTCAAGATTTCATGCATAACATAGAGCAGATATCGAAGTACAGGCATCGTCATTTAGTCAGTGTTCTTGGACACTGCTTTGAATGTTATTTGGATGATTCAAGTGTCAGCAGCATATTTGTTGTCTTTGAGTATGTACCAAATGGCACTCTCAAGAGCTGGATCTCAGATGGACACTATAGAAAATCCCTGACATGGATGCAACGCATAGAAGCTACAATTGGAGTAGCAAAGGGCATCCAATTTTTGCATACAGGGATTGTCCCTGGTGTATATTCAAACAATCTCAAAATAACAGATGTTTTACTTGACCAAAATTTTGTTGCGAAAATCAGCAGTTATGACCTGCCTCTGTTATCTTACACGAGAAAGGTTGGGCAAGTTAATCCTTCAAGTGGATGCAGAAGTCCTAGCATTAAGAAAAGAGTAAAACATGAAGACAAGTCTGATGTATATGATTTTGGAGTAATACTGCTGGAGCTCATTCTAGGAAGGACAATAAAGTCAAGGAATGTGGACACTTTAAAGGATCTGTTGCAAGCAAGCATAACAACTAATGGTGAAGCTAGGAGGAGCATTATAGATCCAGCAGTTCGCAAGGCGTGCTTGGATCAATCATTGAAGACAATGATGGAGATTTGTGTGAGATGCCTAGTCAAAGAGCAAGCAGAGAGGCCATCCATAGAGGATGTTTTGTGGAATTTGCAGTTTGCAGCTCAAGTCCAAGATGCATGGAGAGGGGACTCTCAAAGTAGTAGTAGTAGTGACGGTTCTCCCATCTCACCTTTAGCATCTCGACCATTGAACTTCCATTAG 2355 0.4038 MGNRLYLSVFLVFVTVLLSIFHTEQLQSSDSKTLLRIQQQLNFPPVLSSWNKNTDFCSTDSTSSLTVVCYEGTITQLHIVGETRALLLPRNFSIDSFVRTLVRLPSLKVLTLVSLGIWGPLPGKIAHLSSLEIVNVSSNFLYGSIPLQFSLLSHLQTLILDDNMFSGHLPEWLDSFPALTVLSLKNNLFNSSLPDSLNSLENLRILSLSHNHFYGPVPDLGRLANLQVLELDDNAFGPRFPQLGDKLVTIVLRNNKFRSSIPDEVSSYYQLEKLDISANTFVGPFQLALLSLPSITYVNISGNKLTGMLFENLSCNPGLEAVDLSSNLLTGSLPKCLMSNSNDRTVLYARNCLETNQNQHALPFCHTEAIAVGIVPEGKKHKRVSKEVLSIGIVCGTFGGVAIVALLFFIIRRESVKSKIKNPPTKLISENAASGYTSKLISDARYISQTMKFGTVGLPPYRVFSLEEIVAATNNFDSASFMGEGSQGKMHRGQLKDGLLVAIRSVKMNRSYSTQDFMHNIEQISKYRHRHLVSVLGHCFECYLDDSSVSSIFVVFEYVPNGTLKSWISDGHYRKSLTWMQRIEATIGVAKGIQFLHTGIVPGVYSNNLKITDVLLDQNFVAKISSYDLPLLSYTRKVGQVNPSSGCRSPSIKKRVKHEDKSDVYDFGVILLELILGRTIKSRNVDTLKDLLQASITTNGEARRSIIDPAVRKACLDQSLKTMMEICVRCLVKEQAERPSIEDVLWNLQFAAQVQDAWRGDSQSSSSSDGSPISPLASRPLNFH* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1578 784 Gene3D Transferase(Phosphotransferase) domain 1 559 767 - -
Gso17g1578 784 SUPERFAMILY L domain-like 101 352 - -
Gso17g1578 784 Pfam Protein tyrosine and serine/threonine kinase 482 745 IPR001245 GO:0004672|GO:0006468
Gso17g1578 784 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 10 766 - -
Gso17g1578 784 SUPERFAMILY Protein kinase-like (PK-like) 456 750 IPR011009 -
Gso17g1578 784 MobiDBLite consensus disorder prediction 760 784 - -
Gso17g1578 784 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Gso17g1578 784 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 766 - -
Gso17g1578 784 ProSiteProfiles Protein kinase domain profile. 476 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1578 784 MobiDBLite consensus disorder prediction 760 775 - -
Gso17g1578 784 Gene3D Ribonuclease Inhibitor 27 244 IPR032675 -
Gso17g1578 784 Gene3D Ribonuclease Inhibitor 245 359 IPR032675 -
Gso17g1578 784 Gene3D Phosphorylase Kinase; domain 1 440 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1578 Gso-Chr17 24375090 24381985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1578 43 778 Miscellaneous Gene Families AT3G03770 61.808 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gso17g1578 PK_Tyr_Ser-Thr 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1578 - - gmx:100813207 1509.97