Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso17g1565 | ATGGAGTTCAAATATCGTGATGGTCAAATCCGAAGGACACCATCACCATTGCGGAGCCCTCTTCCTTCCAACTCCTATGTCTCCAATCGCCCATTACATGGGTGTGACTTTGCATCAGGTGGCTTTCCTAGTAATGTTTCAGCGCCAAGAGTTTTCCCAATGGTCATGCCGATCAATGTCAACGAAGTATTCCAACGAGAGTTGGAGAAAGAGAAAATATGGCGAGAGCTAGAGAAGGAAAAAATCAGGAGAGAAATCATTGCTCGTGAGATGGCTTTTGCACAACGACGAGAGTTGGAAGATGAAGTGAGAAAGGAAATGGAGTTAGAGAGAACATCTAGAATGTCGATGCAAAGATCAGAGGGGATTGCATTTCGAGAACCAATTTCAGAGTCTATTAATCAAAGTCGGTCGAATAACATTACCATGTTTGGTGGGCTACCATTCCATTTATCGTCCCAAGCTTCTAAGCAAATTCACACGGATAATATCCAATTTGATAACAAAGAAGCTTCTAATAGCAAGGATAAAGTGATTATATTGAATAAGCCAAATGATCATTGTGGAGAAAAGCGCAAAGCAATGACACTTGCAATTGATGACAATGAGAGTCTACGGAAGAAAGCCAAGAAGGAGTGGACTTGCGAGTTGTGTCAAATTTCTACAACAAGTGAGAAAGGCTTGAATGATCATATTCAAGGGAAAAAACATAAGGCTAACAAAGAATCCACTAGAACTCAAAAAATAGGGCTCGATTCAAGACCAGAAAGTGAAACACTTCATTCTTGTTTCACACCCGCGGACACATGCAATCTGGAATCTGAAGAAAAGGGCCAAGTTGTCCAAAACAGCAAAGGTTTAGGTGATTTGGACGATCAAAATAAAACAACTACTAGTAAACAAGCACATGAAACAAGCGCACTATCAAAAGGGAAGAAATTTGAATTTTGGTGTGAGCTTTGTCAAGTTCAAACTCAATCAGAAATTGTCATGCAAAGTCATCACAATGGAAAAAAACACTTGAGAAATATGAAGAAATTGAATCACAACAATGATGGTGTTGCAAATCTTGGATAA | 1077 | 0.3955 | MEFKYRDGQIRRTPSPLRSPLPSNSYVSNRPLHGCDFASGGFPSNVSAPRVFPMVMPINVNEVFQRELEKEKIWRELEKEKIRREIIAREMAFAQRRELEDEVRKEMELERTSRMSMQRSEGIAFREPISESINQSRSNNITMFGGLPFHLSSQASKQIHTDNIQFDNKEASNSKDKVIILNKPNDHCGEKRKAMTLAIDDNESLRKKAKKEWTCELCQISTTSEKGLNDHIQGKKHKANKESTRTQKIGLDSRPESETLHSCFTPADTCNLESEEKGQVVQNSKGLGDLDDQNKTTTSKQAHETSALSKGKKFEFWCELCQVQTQSEIVMQSHHNGKKHLRNMKKLNHNNDGVANLG* | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso17g1565 | 358 | PANTHER | OS06G0651300 PROTEIN | 1 | 349 | - | - | |
| Gso17g1565 | 358 | MobiDBLite | consensus disorder prediction | 229 | 255 | - | - | |
| Gso17g1565 | 358 | MobiDBLite | consensus disorder prediction | 333 | 358 | - | - | |
| Gso17g1565 | 358 | MobiDBLite | consensus disorder prediction | 274 | 305 | - | - | |
| Gso17g1565 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 203 | 244 | IPR036236 | - | |
| Gso17g1565 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 310 | 347 | IPR036236 | - | |
| Gso17g1565 | 358 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Gso17g1565 | 358 | PANTHER | OS06G0651300 PROTEIN-RELATED | 1 | 349 | - | - | |
| Gso17g1565 | 358 | Pfam | Zinc-finger of C2H2 type | 316 | 340 | - | - | |
| Gso17g1565 | 358 | Pfam | Zinc-finger of C2H2 type | 213 | 237 | - | - | |
| Gso17g1565 | 358 | SMART | c2h2final6 | 213 | 237 | IPR013087 | - | |
| Gso17g1565 | 358 | SMART | c2h2final6 | 316 | 340 | IPR013087 | - | |
| Gso17g1565 | 358 | Gene3D | Classic Zinc Finger | 294 | 347 | - | - | |
| Gso17g1565 | 358 | Gene3D | Classic Zinc Finger | 192 | 243 | - | - | |
| Gso17g1565 | 358 | MobiDBLite | consensus disorder prediction | 229 | 258 | - | - | |
| Gso17g1565 | 358 | MobiDBLite | consensus disorder prediction | 275 | 305 | - | - | |
| Gso17g1565 | 358 | SMART | ZnF_U1_5 | 313 | 347 | IPR003604 | GO:0003676|GO:0008270 | |
| Gso17g1565 | 358 | SMART | ZnF_U1_5 | 210 | 244 | IPR003604 | GO:0003676|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso17g1565 | Gso-Chr17 | 23905955 | 23907780 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso17g1565 | 206 | 344 | C2H2 Transcription Factor Family | AT5G61190 | 28.667 | 3.09e-06 | 47.4 |