Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1520 ATGGTGAAGAAGAGAAAGGAGAAAGGTGCACCTAGGACAGTGGAGGATGTTGATGAAGAGAAGGAGAAGGAAGAAAAAAAGAAAAAGAAGATTAAGGAAGTGTCACATGAATGCTCCTTGGTGAACAAGCACAAGCCCATTTGGATGAGAAAGCCTGAGGAGATGACAAAGGAGGAGTATTCTGCCATAATGAACAGCAGTTCAATCAGTTTAATAAGGAGTATGACAAAGGAGGAGTATTCTGCCATAATGAACAGCAGTTCAATCAGTTTAATAAGGAGTATGACAAAGGAGGAGTATTCTGCCAAGGCAACTACTTGCAAATTGATGGAGGGTATCCGAGAGCCTCAAACCTATTTGATACAATTTACAGAACCAAAAGGAAGCAAATGCAACCTGCTAGAATGTGATAGACAAGTTACAAATAGGGTGGGAACAGAAGCAAAAACAAGGCTAGTGAATGCCACTGAGAATTCTGATTTAGAAAGACGAAAACCTAAAAAGTTAGCCTCAAAAGTGGACAGTGCCATAAGGAGTGAGAGTGAGACTTGGTCAAATTTGGGAGCATCCCACCTCCATAGTTTTGCTTCTGTAGTGGACTGGGCTATAAGGAGTAGCAGGACTGTGTCGAATTTGGGAACATCACCTGTCCCTAGTTTTGCTTCGGCAGAGGACAATAATGCGATGAGGGTTGTTCCTGCACGATTATTCACCTGGGCTGAGCTTGTAGCAGCCACCAACAATTTCTCAATTCACAACCAGATTGGTGCTGGCTGTTTCAGTGTTGTGTACAGAGGTAAACTTGTCGATGGTCGTGAGGTTGCAATCAAGACGGGTGGAACCTGGCCAAAGAGAGAGAGCAAATTGACCTTGTTATCCGGTTTACACCACAAGAACTTGATTAGGCTGGTTGGATTCTGTGAAACGAATTATGAAAGACTCAGTGTGTATGAGTACATGAAGAATGGGTCCTTGTATGATCGTTTGCATGACAAGGGTAGCAGTGTCTTGAATTCGTGGAAAATGAGGATCAAAATTGCTTTGGATGCCTCTCGAGGAATAGAATATCTTCATAATTATGCAGATTCATTTATTATTCACGGAGATATCAAGTCTTCCAACATTCTTCTTGATGCCACCTGGACGGCAAGAGTATCTGATTTTGGATGGAAGTTTATGAGAAACAGACGACGTATAATTGAGAACACTGATCCTGAGTACGTTATTCGAGGTGCATTGTCAGCAGAGAGTGATGTGCATGGGCTTGGAGTTGTACTGTTTGAACTTCTAACAGGAAAGAGACCTACATTCGTGTACGGGGAAGATGGAGGCACCCTATTAAGTAGAAAACATTTGGTAGACTTTGCTGTGACTGCTATTTCAAATGGATTTTTGGAGAAAATTTTGGATCAAAGGGCTGGACAACCCGATGTGAATGAAACAGAAGCAGTAAAGTTAGTGGCTGATACCGCTATCCGTTATGTGAATTTGAAACTGAAAGATAGACCAACCATGGCTGACATTGTAGTCAGATTAGAGCGGGCTTTGGCTATTTTTGAATATGATAGCATTTTCAGGGCTTTGGTTTCGAATTGTTAA 1599 0.419 MVKKRKEKGAPRTVEDVDEEKEKEEKKKKKIKEVSHECSLVNKHKPIWMRKPEEMTKEEYSAIMNSSSISLIRSMTKEEYSAIMNSSSISLIRSMTKEEYSAKATTCKLMEGIREPQTYLIQFTEPKGSKCNLLECDRQVTNRVGTEAKTRLVNATENSDLERRKPKKLASKVDSAIRSESETWSNLGASHLHSFASVVDWAIRSSRTVSNLGTSPVPSFASAEDNNAMRVVPARLFTWAELVAATNNFSIHNQIGAGCFSVVYRGKLVDGREVAIKTGGTWPKRESKLTLLSGLHHKNLIRLVGFCETNYERLSVYEYMKNGSLYDRLHDKGSSVLNSWKMRIKIALDASRGIEYLHNYADSFIIHGDIKSSNILLDATWTARVSDFGWKFMRNRRRIIENTDPEYVIRGALSAESDVHGLGVVLFELLTGKRPTFVYGEDGGTLLSRKHLVDFAVTAISNGFLEKILDQRAGQPDVNETEAVKLVADTAIRYVNLKLKDRPTMADIVVRLERALAIFEYDSIFRALVSNC* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1520 532 Coils Coil 14 37 - -
Gso17g1520 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 365 377 IPR008271 GO:0004672|GO:0006468
Gso17g1520 532 ProSiteProfiles Protein kinase domain profile. 249 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1520 532 Gene3D Transferase(Phosphotransferase) domain 1 320 523 - -
Gso17g1520 532 Pfam Protein tyrosine and serine/threonine kinase 250 510 IPR001245 GO:0004672|GO:0006468
Gso17g1520 532 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 144 523 IPR044815 GO:0004674
Gso17g1520 532 MobiDBLite consensus disorder prediction 1 30 - -
Gso17g1520 532 ProSitePatterns Protein kinases ATP-binding region signature. 255 277 IPR017441 GO:0005524
Gso17g1520 532 SUPERFAMILY Protein kinase-like (PK-like) 229 512 IPR011009 -
Gso17g1520 532 MobiDBLite consensus disorder prediction 7 30 - -
Gso17g1520 532 Pfam Hsp90 protein 8 77 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Gso17g1520 532 SMART serkin_6 249 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1520 532 Gene3D Phosphorylase Kinase; domain 1 220 319 - -
Gso17g1520 532 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 144 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1520 Gso-Chr17 20264490 20268994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1520 234 516 Receptor kinase-like Gene Family AT3G55950 53.312 3.56e-84 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso17g1520 PK_Tyr_Ser-Thr 2.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1520 - - gsj:114391538 1019.99